CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053612_P003	Maize	mitochondrion, plasma membrane	96.46	96.4
TraesCS6A01G178500.1	Wheat	plasma membrane	89.46	89.09
HORVU6Hr1G036800.21	Barley	plasma membrane	89.46	89.09
TraesCS6B01G205900.1	Wheat	plasma membrane	89.18	89.06
TraesCS6D01G166100.1	Wheat	plasma membrane	89.32	88.95
GSMUA_Achr5P06180_001	Banana	plasma membrane	84.4	87.43
GSMUA_AchrUn_...	Banana	mitochondrion, plasma membrane	84.74	86.67
EES08826	Sorghum	mitochondrion	86.2	86.62
EES03260	Sorghum	plasma membrane	62.48	70.39
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	68.17	67.75
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	68.72	67.74
KXG32865	Sorghum	plasma membrane	67.89	67.15
KXG32860	Sorghum	plasma membrane	67.13	66.17
EER98908	Sorghum	cytosol, nucleus, plasma membrane	65.95	65.09
EER98758	Sorghum	cytosol, nucleus, plasma membrane	64.91	64.6
KXG20401	Sorghum	plasma membrane	62.21	61.86
OQU76555	Sorghum	mitochondrion, plasma membrane	54.3	60.56
EES00201	Sorghum	plasma membrane	58.95	59.61
KXG37059	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	56.45	57.98
KXG36359	Sorghum	plastid	56.8	56.21
OQU81756	Sorghum	plasma membrane	48.89	56.09
CDY64951	Canola	cytosol, peroxisome, plasma membrane	53.4	55.8
Bra025424.1-P	Field mustard	cytosol, nucleus, plasma membrane	54.09	55.67
CDX85303	Canola	cytosol	53.95	55.53
AT3G30842.1	Thale cress	cytosol	54.44	55.36
EES01392	Sorghum	cytosol, peroxisome, plasma membrane	56.31	54.83
OQU80771	Sorghum	plasma membrane	42.09	51.7
OQU89274	Sorghum	plasma membrane	33.36	49.08
OQU91497	Sorghum	cytosol, nucleus, plasma membrane	44.38	46.34

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	EntrezGene:8071666	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	UniProt:C5XXZ0	ncoils:Coil	EnsemblPlants:EES04729
ProteinID:EES04729	ProteinID:EES04729.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	ProteinID:OQU84612.1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF443
SMART:SM00382	EnsemblPlantsGene:SORBI_3004G087700	SUPFAM:SSF52540	unigene:Sbi.10105	TMHMM:TMhelix	UniParc:UPI0001A857D3
RefSeq:XP_002451753.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:7421357..7428285

Molecular Weight (calculated)

162456.0 Da

IEP (calculated)

6.527

GRAVY (calculated)

0.065

Length

1442 amino acids

Sequence
(BLAST)

0001: MDLVRMGSIA SGSMRRTASS WRGSGRSDAF GRSVREEDDE EALRWAAIEK LPTYDRMRKG ILTGAGAGGG IEEVDIQGLG MQERQNLIER LVRTAEEDNE
0101: RFLLKLRDRM ERVGIDNPTI EVRFENLNID AEAYVGNRGV PTMTNFFSNK VMDALSAMHI VSSGKRPISI LHDISGIIRP GRMSLLLGPP GSGKTSLLLA
0201: LAGKLDSALK VSGRVTYNGH DMDEFVPQRT SAYIGQHDVH VGEMTVRETL AFSARCQGVG TRYDMLTELS RREKEANIKP DPDIDVYMKA ISVEGQESVV
0301: TDYILKILGL EICADTMVGD SMIRGISGGQ KKRVTTGEML VGPAKALFMD EISTGLDSST TYQIVNSLRQ SVHILGGTAL IALLQPAPET YELFDDIVLL
0401: SEGQIVYQGP RENVLEFFEA MGFKCPERKG VADFLQEVTS RKDQHQYWCR RDERYRYISV NDFSEAFKAF HVGRKLGSEL MEPFDRTRNH PAALTTSKYG
0501: ISKMELLRAC FSREWLLMKR NSFVYIFKVV QLIILGTIAM TVFLRTTMHR RSVEDGVIFL GAMFLGLVTH LFNGFAELAM SIAKLPIFYK QRDLLFYPSW
0601: AYALPTWLLK IPISFLECAV WIGMTYYVIG FDPNIERFFR HYLLLVLISQ MASGLFRLLA ALGREMVVAD TFGSFAQLVL LILGGFLIAR DNIKKYWIWG
0701: YWSSPLMYAQ NAIAVNEFLG HSWQKVVDST QSNDTLGVEI LKARGIFVDP NWYWIGVGAL LGYIMLFNVL FVLFLDWLGP LGQGQAVVSE EELREKHVNR
0801: TGENVELLPL GTASQNSPSD GRGEIAGAET RKRGMVLPFM PLSITFDNVK YSVDMPQEMK DKGITEDRLL LLKGVSGAFR PGVLTALMGV SGAGKTTLMD
0901: VLAGRKTGGY IEGDISISGY PKKQETFARI AGYCEQNDIH SPHVTVYESL LYSAWLRLPH EVDSEARKMF VEEVMELVEL TPLRGALVGL PGVNGLSTEQ
1001: RKRLTIAVEL VANPSIIFMD EPTSGLDARA AAIVMRTVRN TVDTGRTVAC TIHQPSIDIF EAFDELFLMK RGGEEIYVGP LGRNSCHLID YFEGIEGVKK
1101: IKDGYNPATW MLEVTTLAQE DILGINFAEV YRNSDLYRRN KALISELSTP PPGSKDLYFP TQYSQSFLTQ CMACLWKQHM SYWRNPSYTA TRIFFTTVIA
1201: LIFGTIFLNL GKKIGTRQDL LYALGSMYAA VLFIGIQNGQ TVQPIVDVER TVFYREKAAG MYSALPYAFA QVLIEIPHIF LQTVVYGLIV YSLIGFEWTA
1301: EKFFWYMFFM FFTFMYFTFY GMMAVAMTPN SDIAAIVSTA FYAIWNIFAG FLIPRPRIPI WWRWYSWACP VAWTLYGLVA SQFGDITDVR LEDDEIVKDF
1401: VNRFFGFQHD NLGYVATAVV GFTVLFAFVF AFSIKVFNFQ RR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.