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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • plastid 1
  • mitochondrion 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:cytosol
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011319_P003 Maize cytosol, mitochondrion, peroxisome, plasma membrane 96.64 84.55
Zm00001d044443_P001 Maize cytosol, mitochondrion, nucleus, plasma membrane 95.31 84.25
Os01t0342750-01 Rice plasma membrane 45.94 83.88
TraesCS3A01G218000.1 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 89.14 78.74
TraesCS3B01G248500.1 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 89.14 78.74
TraesCS2A01G483300.1 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 88.75 78.4
TraesCS3D01G234300.2 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 88.75 78.4
GSMUA_Achr1P14530_001 Banana mitochondrion, plasma membrane 69.22 77.65
HORVU3Hr1G053380.1 Barley cytosol, mitochondrion, peroxisome, plasma membrane 89.22 77.42
HORVU3Hr1G071470.1 Barley cytosol, mitochondrion, nucleus, plasma membrane 82.97 73.75
TraesCS3A01G272800.2 Wheat cytosol, mitochondrion, nucleus, plasma membrane 82.89 73.68
PGSC0003DMT400005785 Potato cytosol, peroxisome, plasma membrane 35.94 73.6
TraesCS3D01G272200.2 Wheat cytosol, mitochondrion, nucleus, plasma membrane 82.42 73.26
TraesCS3B01G306400.2 Wheat cytosol, mitochondrion, nucleus, plasma membrane 82.34 71.41
Solyc12g019640.1.1 Tomato plasma membrane 33.28 70.07
GSMUA_Achr9P02950_001 Banana plasma membrane 73.52 67.75
PGSC0003DMT400043433 Potato endoplasmic reticulum, plasma membrane 7.97 67.11
GSMUA_Achr6P34530_001 Banana plasma membrane 68.75 66.72
KXG32865 Sorghum plasma membrane 75.55 66.32
KXG32863 Sorghum cytosol, peroxisome, plasma membrane 74.38 65.61
PGSC0003DMT400048449 Potato cytosol, peroxisome, plasma membrane 62.19 65.41
EES03255 Sorghum cytosol, peroxisome, plasma membrane, plastid 74.69 65.35
VIT_09s0002g05370.t01 Wine grape mitochondrion, plasma membrane 71.72 64.6
KXG32860 Sorghum plasma membrane 73.2 64.05
EER98908 Sorghum cytosol, nucleus, plasma membrane 72.5 63.52
VIT_09s0002g05560.t01 Wine grape plasma membrane 71.64 63.07
KRH23522 Soybean mitochondrion 70.23 63.04
EER98758 Sorghum cytosol, nucleus, plasma membrane 70.94 62.66
EES04729 Sorghum mitochondrion 70.39 62.48
KRH09797 Soybean endoplasmic reticulum 69.53 62.37
KRH52503 Soybean cytosol, peroxisome, plasma membrane 70.55 62.36
KRH47506 Soybean endoplasmic reticulum 69.3 62.2
Solyc08g067620.2.1 Tomato nucleus 70.47 62.08
VIT_04s0008g04790.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 69.61 62.05
Solyc05g053590.2.1 Tomato cytosol, mitochondrion, peroxisome, plasma membrane 68.28 61.9
KRH61824 Soybean cytosol, mitochondrion, peroxisome, plasma membrane 70.0 61.84
KRH47220 Soybean plasma membrane 45.62 61.41
Solyc12g098210.1.1 Tomato plastid 68.36 61.4
PGSC0003DMT400034130 Potato cytosol, mitochondrion, peroxisome, plasma membrane, plastid 59.69 61.37
PGSC0003DMT400076208 Potato plastid 68.91 61.25
KXG20401 Sorghum plasma membrane 69.38 61.24
CDY39660 Canola cytosol, nucleus, plasma membrane 67.58 61.13
PGSC0003DMT400061280 Potato cytosol, nucleus, plasma membrane, plastid 68.52 61.12
Bra026124.1-P Field mustard cytosol, nucleus, plasma membrane, plastid 67.42 61.08
CDY36570 Canola cytosol, nucleus, plasma membrane, plastid 67.42 61.08
Solyc09g091660.2.1 Tomato plastid 68.59 60.97
Solyc12g100180.1.1 Tomato mitochondrion, nucleus, plasma membrane, plastid 68.28 60.91
PGSC0003DMT400076209 Potato plasma membrane 68.12 60.85
AT1G15520.1 Thale cress plastid 67.34 60.58
KRH16029 Soybean cytosol 68.12 60.26
EES08826 Sorghum mitochondrion 67.34 60.07
KRH05088 Soybean endoplasmic reticulum 67.58 59.78
KRH67471 Soybean endoplasmic reticulum 67.27 59.58
KRG95762 Soybean mitochondrion 65.78 58.88
KRH09795 Soybean endoplasmic reticulum 68.75 58.2
OQU76555 Sorghum mitochondrion, plasma membrane 57.34 56.77
PGSC0003DMT400005783 Potato cytosol, peroxisome, plasma membrane 69.92 56.65
EES00201 Sorghum plasma membrane 60.62 54.42
OQU81756 Sorghum plasma membrane 53.05 54.02
KXG37059 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 58.36 53.21
KRG95752 Soybean cytosol, peroxisome, plasma membrane 65.55 52.08
OQU80771 Sorghum plasma membrane 47.03 51.28
KXG36359 Sorghum plastid 57.19 50.24
EES01392 Sorghum cytosol, peroxisome, plasma membrane 56.48 48.82
Solyc12g019620.1.1 Tomato cytosol, nucleus, plasma membrane 31.8 48.63
OQU89274 Sorghum plasma membrane 36.95 48.27
VIT_04s0008g04840.t01 Wine grape plasma membrane 39.84 45.58
OQU91497 Sorghum cytosol, nucleus, plasma membrane 46.88 43.45
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABCG_PDR_1InterPro:ABCG_PDR_2InterPro:ABC_2_trans
InterPro:ABC_transporter-likeUniProt:C5XQX9EnsemblPlants:EES03260ProteinID:EES03260ProteinID:EES03260.2GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005623GO:GO:0005886GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085InterPro:IPR003439InterPro:P-loop_NTPase
InterPro:PDR_assocPFAM:PF00005PFAM:PF01061PFAM:PF08370PFscan:PS50893PANTHER:PTHR19241
PANTHER:PTHR19241:SF352SMART:SM00382EnsemblPlantsGene:SORBI_3003G216300SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI00081AC87F
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:-:55158674..55164380
Molecular Weight (calculated)
144383.0 Da
IEP (calculated)
8.113
GRAVY (calculated)
0.102
Length
1280 amino acids
Sequence
(BLAST)
0001: MTVLHDVSGV VKPRRMTLLL GPPGSGKTTL LLALAGKLDK DLRVSGKVTY NGHGMNEFVP ERTAAYISQH DLHIGEMTVR ETLAFSARCQ GVGTRYEMLT
0101: ELARREKAAN IKPDHDIDVY MKASAMGGQE SSIVTDYILK ILGLEVCADT VVGNEMMRGI SGGQRKRVTT GEMLVGPARA LFMDEISTGL DSSTTYQIVN
0201: SLRQTIHILG GTAVISLLQP APETYNLFDD IILLSDGHVV YQGPRENVLE FFEFMGFRCP ARKGVADFLQ EVTSRKDQGQ YWYRQDRPYC FVPVKKFADA
0301: FSTFHVGRSI QNELSEPFDR TWSHPAALAT SKFGVSRKEL LKATIDRELL LMKRNAFMYI FKAVNLTVMS FIVMTTFFRT NMKREESYGG IYMGALFFAL
0401: DTIMFNGFAE LAMTVMKLPV FFKQRDLLFF PAWAYTIPSW ILQIPITFLE VGVYVFTTYY VIGFDPSVIR FFKQYLLLLA LNQMSSALFR FIAGIGRDMV
0501: VSHTFGPLAL LAFQTLGGFI LARPDVKKWW IWGYWISPLS YAQNAISTNE FLGHSWNKIQ NGTTVGIVVL RSRGVFTEAK WYWIGLGALV GYTLLFNLLY
0601: TVALAVLSPF TDSHGSMSEE ELKEKHASLT GEVIEGHKEK KSRRQDLELS HSVGQNSVHS SVDSSQNRKG MTLPFPPLSL TFNDIRYSVD MPEAMKAQGV
0701: TEDRLLLLKG VSGSFRPGVL TALMGVSGAG KTTLMDVLAG RKTGGYIEGD ITISGYPKKQ ETFARISGYC EQNDIHSPHV TVYESLLFSA WLRLPSDVNL
0801: ETRKMFIEEV MDLVELTSLR GALVGLPGVS GLSTEQRKRL TIAVELVANP SIVFMDEPTS GLDARAAAIV MRTVRNTVNT GRTVVCTIHQ PSIDIFEAFD
0901: ELFLMKRGGE EIYVGPVGQN SSKLIEYFEG IEGISKIKDG YNPATWMLEV TSSSQEEILG VDFSEIYRQS ELYQRNKALI EELSTPPSGS IDLNFPTQYS
1001: RSFFTQCLAC FWKQKKSYWR NPSYTAVRLL FTIVIALMFG TMFWDLGRKT KKQQDLFNAM GSMYAAVIYI GVQNSGSVQP VVVVERTVFY RERAAGMYSA
1101: FPYAFGQVAI EFPYIFVQTL LYGVLVYSMI GFEWTVAKFL WYMFFMYFTL LYFTFYGMMA VGLTPNESIA AIISSAFYNI WNLFSGYLIP RPKLPIWWRW
1201: YSWACPVAWT LYGLVASQFG DITHPLDDSV TGQSVAQFIE DYFGFRHDFL WVVAVVHVGL TVFFAFLFSF AIMKFNFQKR
Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)
0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR
Arabidopsis Description
ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.