CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048860_P001	Maize	cytosol, nucleus, plasma membrane	92.47	91.77
EES04729	Sorghum	mitochondrion	86.62	86.2
HORVU6Hr1G036800.21	Barley	plasma membrane	83.07	82.32
TraesCS6B01G205900.1	Wheat	plasma membrane	82.72	82.2
TraesCS6D01G166100.1	Wheat	plasma membrane	82.86	82.11
TraesCS6A01G178500.1	Wheat	plasma membrane	82.86	82.11
GSMUA_Achr5P06180_001	Banana	plasma membrane	77.84	80.24
GSMUA_AchrUn_...	Banana	mitochondrion, plasma membrane	78.4	79.79
EES03260	Sorghum	plasma membrane	60.07	67.34
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	65.64	64.39
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	64.6	63.89
KXG32865	Sorghum	plasma membrane	64.11	63.1
KXG32860	Sorghum	plasma membrane	64.04	62.82
EER98908	Sorghum	cytosol, nucleus, plasma membrane	62.93	61.81
EER98758	Sorghum	cytosol, nucleus, plasma membrane	62.02	61.42
KXG20401	Sorghum	plasma membrane	59.72	59.1
OQU76555	Sorghum	mitochondrion, plasma membrane	51.92	57.62
EES00201	Sorghum	plasma membrane	57.14	57.5
KXG37059	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	55.19	56.41
KXG36359	Sorghum	plastid	56.17	55.32
OQU81756	Sorghum	plasma membrane	47.25	53.94
CDY64951	Canola	cytosol, peroxisome, plasma membrane	51.15	53.19
EES01392	Sorghum	cytosol, peroxisome, plasma membrane	54.84	53.14
AT3G30842.1	Thale cress	cytosol	52.47	53.1
Bra025424.1-P	Field mustard	cytosol, nucleus, plasma membrane	51.71	52.96
CDX85303	Canola	cytosol	51.64	52.89
OQU80771	Sorghum	plasma membrane	41.6	50.85
OQU89274	Sorghum	plasma membrane	32.54	47.65
OQU91497	Sorghum	cytosol, nucleus, plasma membrane	43.21	44.9

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	UniProt:C5Y6B2	ncoils:Coil	EnsemblPlants:EES08826
ProteinID:EES08826	ProteinID:EES08826.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF443	SMART:SM00382	EnsemblPlantsGene:SORBI_3005G183900	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00081AC791
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:66885571..66892778

Molecular Weight (calculated)

162129.0 Da

IEP (calculated)

6.897

GRAVY (calculated)

0.100

Length

1435 amino acids

Sequence
(BLAST)

0001: MRMGSNLDGS LLRTSSSWWA SRGSNAFRSS AREEDDEEVL RWAAIEKLPT YDRMRKGILT AVGGGIQEVD IQGLSMQERQ CLIQRLIRIP EEDNERFLLK
0101: LRERMERVGI ENPTIEVRFE HLTINTEVYV GKQGVPTFTN FFSNKVMDAL TALHIISSGK RPISILHDIS GIVRPNRMSL LLGAPGSGKT SLLLALAGKL
0201: DSTLKVSGRV TYNGHDMDEF VPQSTSAYIG QHDVHIGEMT VRETLAFAAR CQGVGTRYDM LTELSRREKQ AKIRPDLDID VYMKAISQEG QENLITDYIL
0301: KILGLDICAD IMVGDSMIRG ISGGQKKRVT IGEMLVGPAK TLFMDEISTG LDSSTTYQII NSLRQSVHIL GGTALISLLQ PAPETYELFD DIVLLAEGQI
0401: VYQGPRENVI EFFEAMGFRC PDRKGVADFL QEVTSRKDQY QYWCRRDEPY LYVSVNDFVE AFKVFHVGNA LGLELEVPFD RTKNHPAALT TSKFGISRME
0501: LLKACFSREW LLMKRNSFVY IIKVVQLIIL GTIAMTVFLR TKMHRHDVED GVIFLGAMFL GLVTHLFNGF VEVAMSIAKL PIFYKQRDHL FYPSWAYALP
0601: TWLLKIPISF LECAVWTGMT YYVIGFDPSI ERFFRHYLLL VLISQMASGL FRLLAAVGRD MVVAETFGSF AQIVLLILGG FLIARNNIKK SWIWGYWSSP
0701: LMYAQNAIAV NEFLGNSWQV DRTENNDTLG VQILKARGIF VDRNWYWIGV GALLGYIMIF NLLFVLFLDW LGPLRKGQTI VSDKGLREKQ QNRTGENVEL
0801: LPLGTDCQNS PSDGSGEITR ADTKKRGMVL PFTPLTITFD NIKYSVDMPQ EMKNKGITED RLLLLKGVSG AFRPGALTAL MGVSGAGKTT LLDVLAGRKT
0901: SGYTEGDIYV SGYPKKQETF ARIAGYCEQS DIHSPHVTVY ESLLFSAWLR LPPEVDLEAR KMFVEEVAEL VELMPLRGAL VGLPGVDGLS TEQRKRLTIA
1001: VELVANPSII FMDEPTSGLD ARAAAIVMRT VRNTVDTGRT VVCTIHQPSI DIFEAFDELF LLKWGGEEIY VGPLGDKSCH LIKYFEGVRG VKKIKDGYNP
1101: ATWMLEVTTL AQEDVLGCNF AEVYRNSDLY RKNKNLVSEL STPPPGSKDL YFPTQYSQSS IIQCMACLWK QHKSYWRNPS YTATRIFFTT LIGFVFGTIF
1201: LSLGKKVVKR QDLFDALGSM YAAVLLIGVQ NGLSVQPIVE VERTVFYREK AAGMYSALPY AFAQVVIEIP HIFLQTVVYG LIIYALIDFD WTVQKFFWYM
1301: FFMYFTFMYF TFYGMMLVAM TPNSDIAALA STACYAIWNI FAGFIIPRPR IPIWWRWYSW ACPVAWTLYG LVASQFGDII DVELEDGEIV KDFINRFFGF
1401: THDHLGYAAT AVVGFTVCFS FMFAFCIKVF NFQIR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.