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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 2
  • plasma membrane 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0609300-01 Rice plasma membrane 72.55 81.98
HORVU3Hr1G053350.8 Barley vacuole 81.31 81.54
TraesCS3D01G234400.1 Wheat plasma membrane 81.11 81.5
TraesCS3A01G217900.1 Wheat cytosol 81.11 81.5
TraesCS3B01G248400.1 Wheat cytosol, peroxisome, plasma membrane 81.04 81.43
KXG32863 Sorghum cytosol, peroxisome, plasma membrane 80.83 81.39
KXG32865 Sorghum plasma membrane 80.83 81.0
EES03255 Sorghum cytosol, peroxisome, plasma membrane, plastid 76.8 76.69
GSMUA_Achr1P14530_001 Banana mitochondrion, plasma membrane 59.82 76.6
KXG32860 Sorghum plasma membrane 75.22 75.12
EES03260 Sorghum plasma membrane 63.52 72.5
PGSC0003DMT400005785 Potato cytosol, peroxisome, plasma membrane 30.87 72.16
GSMUA_Achr6P34530_001 Banana plasma membrane 65.02 72.02
GSMUA_Achr9P02950_001 Banana plasma membrane 68.04 71.56
VIT_09s0002g05370.t01 Wine grape mitochondrion, plasma membrane 67.56 69.46
Solyc12g019640.1.1 Tomato plasma membrane 28.68 68.91
KXG20401 Sorghum plasma membrane 67.42 67.93
KRH23522 Soybean mitochondrion 66.12 67.74
VIT_09s0002g05560.t01 Wine grape plasma membrane 67.28 67.61
KRH09797 Soybean endoplasmic reticulum 65.98 67.55
PGSC0003DMT400034130 Potato cytosol, mitochondrion, peroxisome, plasma membrane, plastid 57.43 67.39
PGSC0003DMT400076208 Potato plastid 66.05 67.01
Solyc09g091660.2.1 Tomato plastid 66.05 67.01
KRH47506 Soybean endoplasmic reticulum 65.37 66.97
Solyc05g053590.2.1 Tomato cytosol, mitochondrion, peroxisome, plasma membrane 64.68 66.93
Solyc08g067620.2.1 Tomato nucleus 66.39 66.76
Bra026124.1-P Field mustard cytosol, nucleus, plasma membrane, plastid 64.48 66.67
Solyc12g098210.1.1 Tomato plastid 65.02 66.67
EER98758 Sorghum cytosol, nucleus, plasma membrane 66.12 66.67
CDY36570 Canola cytosol, nucleus, plasma membrane, plastid 64.41 66.6
VIT_04s0008g04790.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 65.37 66.5
CDY39660 Canola cytosol, nucleus, plasma membrane 64.41 66.5
PGSC0003DMT400061280 Potato cytosol, nucleus, plasma membrane, plastid 65.23 66.41
AT1G15520.1 Thale cress plastid 64.48 66.2
EES04729 Sorghum mitochondrion 65.09 65.95
KRH61824 Soybean cytosol, mitochondrion, peroxisome, plasma membrane 65.37 65.91
KRH52503 Soybean cytosol, peroxisome, plasma membrane 65.3 65.88
Solyc12g100180.1.1 Tomato mitochondrion, nucleus, plasma membrane, plastid 64.54 65.71
PGSC0003DMT400076209 Potato plasma membrane 64.0 65.25
KRH67471 Soybean endoplasmic reticulum 64.34 65.05
KRG95762 Soybean mitochondrion 63.18 64.55
KRH16029 Soybean cytosol 63.66 64.27
PGSC0003DMT400048449 Potato cytosol, peroxisome, plasma membrane 53.39 64.09
KRH05088 Soybean endoplasmic reticulum 63.31 63.93
KRH09795 Soybean endoplasmic reticulum 66.05 63.82
EES08826 Sorghum mitochondrion 61.81 62.93
PGSC0003DMT400043433 Potato endoplasmic reticulum, plasma membrane 6.37 61.18
KRH47220 Soybean plasma membrane 39.77 61.09
PGSC0003DMT400005783 Potato cytosol, peroxisome, plasma membrane 66.05 61.08
EES00201 Sorghum plasma membrane 56.74 58.13
OQU76555 Sorghum mitochondrion, plasma membrane 51.13 57.77
KRG95752 Soybean cytosol, peroxisome, plasma membrane 63.04 57.17
KXG37059 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 53.87 56.05
KXG36359 Sorghum plastid 54.83 54.98
Solyc12g019620.1.1 Tomato cytosol, nucleus, plasma membrane 31.35 54.72
EES01392 Sorghum cytosol, peroxisome, plasma membrane 54.83 54.09
OQU81756 Sorghum plasma membrane 46.06 53.54
OQU80771 Sorghum plasma membrane 40.86 50.85
VIT_04s0008g04840.t01 Wine grape plasma membrane 36.28 47.36
OQU89274 Sorghum plasma membrane 31.62 47.14
OQU91497 Sorghum cytosol, nucleus, plasma membrane 44.15 46.71
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300EntrezGene:8062112InterPro:AAA+_ATPaseInterPro:ABCG_PDR_1InterPro:ABCG_PDR_2
InterPro:ABC_2_transInterPro:ABC_trans_NInterPro:ABC_transporter-likeUniProt:C5XCV5EnsemblPlants:EER98908ProteinID:EER98908
ProteinID:EER98908.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085
InterPro:IPR003439InterPro:P-loop_NTPaseInterPro:PDR_assocPFAM:PF00005PFAM:PF01061PFAM:PF08370
PFAM:PF14510PFscan:PS50893PANTHER:PTHR19241PANTHER:PTHR19241:SF273SMART:SM00382EnsemblPlantsGene:SORBI_3002G203800
SUPFAM:SSF52540TMHMM:TMhelixUniParc:UPI0001A83FDERefSeq:XP_002462387.1SEG:seg:
Description
hypothetical protein
Coordinates
chr2:-:59481623..59489573
Molecular Weight (calculated)
164513.0 Da
IEP (calculated)
8.470
GRAVY (calculated)
0.051
Length
1461 amino acids
Sequence
(BLAST)
0001: MDPSGEIRKV ASMRRDSGGS VWRSGGNDIF SRSSRRDDDM DDEEALRWAT LEKLPTRDRV RRAIIFPLPP AGAAGTTTGQ QQGLVDVDVL SLGPGERRAL
0101: LERLVRVADE DHERFLVKLR ERLDRVGIDM PTIEVRFEHL NVEAEVRVGS SGIPTVLNSI TNTLEEAATA LRILRSRKRA LPILHDVSGI IRPRRMTLLL
0201: GPPGSGKTTL LLALAGRLDK DLKVSGRVSY NGHGMEEFVP QRTAAYISQH DLHIAEMTVR ETLAFSARCQ GVGSRFDMLM ELSRREKAAN IKPDADIDAF
0301: MKASAVGGHE ANVVTDYILK ILGLELCADT MVGDEMLRGI SGGQRKRVTT GEMLVGPARA LFMDEISTGL DTSTTFQIVN SLRQSIHVLG GTAVISLLQP
0401: GPETFNLFDD IILLSDGQVV YQGPREDVIE FFESMGFRCP QRKGVADFLQ EVTSKKDQKQ YWAWSDKPYR FVPAKEFATA HKLFHTGRAL AKDLAMPFNK
0501: NKSHPAALTT TRYGVSGMEL LKANIDREIL LMKRNSFIYV FRTFQLTLMS IIAMTVFFRT NMKHDSVASG GIYMGAMFFG ILMIMYNGFS ELALTVFRLP
0601: VFFKQRDLLF YPAWAYTIPS WILKIPISFM EVSGYVFLTY YVIGYDPNVG RFFKQYLIML AINQLAASLF RFIGGAARNM IVANVFAMLV MMAAIILNGF
0701: IIIRDKVKKW WIWGYWISPL MYVQNAITVN EMLGHSWDKV LNRTISNETL GVQVLKSHGV FPEAKWYWIG FGALLGFTIL LNVVFTFALT YLKPNGNPKP
0801: SISEEELKLK CSNVNNDIMD ANPLASRTTL QLIGNNTETN LEMLEDNSGP SQRGMVLPFP PLSLSFDDIR YSVDMPQEMK AQGVVEDRLI LLKGISGSFR
0901: PGVLTALMGV SGAGKTTLMD VLAGRKTGGY VEGNISISGY LKNQETFARV SGYCEQNDIH SPQVTVDESL LFSAWLRLPK DVDSNTRKMF IEEVMELVEL
1001: KPLRDALVGL PGVNGLSTEQ RKRLTIAVEL VANPSIIFMD EPTSGLDARA AAIVMRTVRN TVNTGRTVVC TIHQPSIDIF EQFDELFLMK RGGEVIYAGP
1101: LGHNSLELIK YFEAIEGVSK IKDGYNPATW MLEVTTVSQE HVLGVDFSDI YKKSELYQRN KDLIKELSQP APGSRDLYFP TKYSQSSFTQ CMACIWKQNM
1201: SYWRNPPYNT ARFIFTTITA LIFGTMFWNL GSKIDKSQDL FNALGSMYLS VIFLGCTNSI SVQPVVAVER TVFYRERAAG MYSAFPYAFG QVVIELPYAL
1301: VQASIYGVIV YAMIGFEWTA AKFFWYLFFM YFTLLYFTFY GMMGVGLTPN YQIASIVSTA FYNIWNLFSG FFIPRPKTPI WWRWYCWICP VAWTLYGLVV
1401: SQYGDITTPM EDGRTVNVFL EDYFDFKHSW LGRAAAIVVA FSVFFATLFA FATMKLNFEK R
Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)
0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR
Arabidopsis Description
ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.