Factsheet for PGSC0003DMT400048449

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

cytosol 2
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g019640.1.1	Tomato	plasma membrane	48.4	96.88
PGSC0003DMT400005785	Potato	cytosol, peroxisome, plasma membrane	39.93	77.76
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	66.06	70.46
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	8.63	69.08
Os01t0342750-01	Rice	plasma membrane	37.96	65.91
Os08t0384500-01	Rice	plasma membrane	41.0	65.4
TraesCS3B01G523700.1	Wheat	mitochondrion	55.96	63.64
Os01t0609300-01	Rice	plasma membrane	66.47	62.57
EES03260	Sorghum	plasma membrane	65.41	62.19
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	62.53	61.27
VIT_04s0008g04790.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	70.91	60.1
Os09t0333000-00	Rice	plasma membrane	39.85	59.73
KRH52503	Soybean	cytosol, peroxisome, plasma membrane	70.83	59.53
KRH61824	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	70.67	59.35
Os01t0609900-02	Rice	plasma membrane	66.64	58.43
Os09t0332300-00	Rice	plasma membrane	39.44	58.11
GSMUA_Achr9P02950_001	Banana	plasma membrane	66.06	57.88
GSMUA_Achr6P34530_001	Banana	plasma membrane	62.7	57.85
KRH05088	Soybean	endoplasmic reticulum	67.13	56.46
KRH16029	Soybean	cytosol	67.13	56.46
Zm00001d011315_P002	Maize	plasma membrane	66.97	56.44
PGSC0003DMT400076208	Potato	plastid	66.72	56.39
PGSC0003DMT400076209	Potato	plasma membrane	65.9	55.97
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	65.98	55.96
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	66.47	55.75
TraesCS6D01G094800.1	Wheat	plasma membrane	42.32	55.62
KXG32865	Sorghum	plasma membrane	66.47	55.49
TraesCS7B01G292700.1	Wheat	plasma membrane	65.16	55.45
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	66.23	55.43
TraesCS3A01G217900.1	Wheat	cytosol	66.23	55.43
TraesCS3D01G234400.1	Wheat	plasma membrane	66.15	55.36
HORVU3Hr1G053350.8	Barley	vacuole	66.23	55.32
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	56.53	55.26
HORVU7Hr1G092510.2	Barley	plasma membrane	65.41	55.24
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	66.39	55.23
PGSC0003DMT400005783	Potato	cytosol, peroxisome, plasma membrane	71.65	55.19
TraesCS7A01G391100.1	Wheat	plasma membrane	65.41	55.16
TraesCS7D01G386600.1	Wheat	plasma membrane	65.41	55.09
Os01t0609200-00	Rice	plasma membrane	66.23	55.05
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	65.08	55.0
HORVU7Hr1G092380.8	Barley	cytosol	65.32	54.94
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	65.0	54.93
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	65.32	54.9
TraesCS7D01G386500.1	Wheat	plasma membrane	65.49	54.89
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	64.83	54.87
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	64.91	54.86
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	56.7	54.85
TraesCS7A01G391000.1	Wheat	plasma membrane	65.32	54.75
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.16	54.73
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.16	54.73
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	64.91	54.67
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.08	54.66
TraesCSU01G097600.2	Wheat	plasma membrane	65.16	54.61
KXG32860	Sorghum	plasma membrane	65.65	54.61
Os01t0609000-00	Rice	plasma membrane	65.74	54.5
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	65.41	54.41
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	64.5	54.33
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	64.67	54.31
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	64.34	54.15
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	64.26	54.01
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	64.17	53.94
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	64.26	53.93
GSMUA_Achr9P01490_001	Banana	plasma membrane	66.15	53.92
EER98758	Sorghum	cytosol, nucleus, plasma membrane	64.01	53.76
KXG20401	Sorghum	plasma membrane	64.01	53.72
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	65.08	53.69
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	64.83	53.46
EER98908	Sorghum	cytosol, nucleus, plasma membrane	64.09	53.39
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	62.28	52.97
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	60.64	52.87
Zm00001d044442_P036	Maize	plasma membrane	66.06	51.08
PGSC0003DMT400046986	Potato	plasma membrane	36.89	50.45
PGSC0003DMT400050166	Potato	plastid	57.6	50.36
PGSC0003DMT400067210	Potato	plasma membrane	57.6	49.82
PGSC0003DMT400068277	Potato	cytosol	53.99	49.18
PGSC0003DMT400050158	Potato	cytosol, peroxisome, plasma membrane	57.93	48.76
PGSC0003DMT400060396	Potato	plastid	58.67	48.31
PGSC0003DMT400006729	Potato	plastid	57.44	46.6
VIT_04s0008g04840.t01	Wine grape	plasma membrane	40.92	44.5
PGSC0003DMT400060117	Potato	cytosol	35.58	42.66
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	27.12	41.93
Os01t0516900-00	Rice	plasma membrane	24.08	41.74

Protein Annotations

EntrezGene:102598831	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M1BMF9	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061	PFAM:PF08370
EnsemblPlantsGene:PGSC0003DMG400018818	PGSC:PGSC0003DMG400018818	EnsemblPlants:PGSC0003DMT400048449	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF443
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296ACD9	RefSeq:XP_015164526.1	SEG:seg

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400018818]

Coordinates

chr12:-:23009880..23018244

Molecular Weight (calculated)

137728.0 Da

IEP (calculated)

8.438

GRAVY (calculated)

0.162

Length

1217 amino acids

Sequence
(BLAST)

0001: MDEFVPERTC AYISQDDVHL ANLTVRETLE FSARCQGVGP RYEMLEELLK REKEANIKPD PDIDMFMKAA TVQGKEPNII TDYTLKILGL EICAETLVGD
0101: EMVRGISGGQ LKRLTTGEMM VGPARALFMD EISTGLDSST TFQIVKSIRQ SIHILKGTAL ISLLQPAPET YGLFDDVILL ADGRIVYQGP REHVLEFFEF
0201: VGFKCPRRKG VADFLQEVTS RKDQEQYWAR TDEPYKFVSS REFFEAFQSF HVGRELANDL SVPFDKANKN PDALTTNKYG VKKRDLLKAC MSREILLMKR
0301: NIFVYLFKII QHLLLASITM TLFLRIKMPK ETQTDGFIFM GALFFTVIAA MFNGCSEVPF TILKLPVFFK QHNLLFFPVW AYTLPAWIVK IPISIIESSI
0401: WVSITYYAIG FDPNIVRFSK QLFLVICVDQ MASGLFRFMA AVGRKMIIAN TLGSLALLLA LVMGGFIMDR DDVKKWWLWG YWCSPMMYAQ NAITVNEFLG
0501: NSWSNNVPGS TDTLGVVVLK SRAMFPDAHW YWIGVGAVLG YVVFFNFMAT LALTYLKPFG KSGAVLPDEK VVKRNTKIRN IDIKSSTGEM KNEGKRNAPI
0601: RETKSIKKGG MILPFQPLSL VFDDIRYAVD VPQDIKPQGV LEARLELLKG ISGAFRPGVL TALMGISGAG KTTLMDVLAG RKTHGYIEGS ITISGYPKKQ
0701: ETFARIAGYC EQTDIHSPNL TVHESLQFSA WLRLPQEVDS ATRKMFIEEV MDLVELTPLK EALVGLPSGS GLSVEQRKRL TIAVELVANP SIIFMDEPTS
0801: GLDARAAAIV MRTVRNTVDT GRTVVCTIHQ PSIDIFDAFD ELVLLKQGGE EIYVGPLGHH SSELIKYFEG INGVPKIKDG YNPATWVLEI TSKAQEAALG
0901: VNFAVLYKSS ELYRNNKSLI REASISIPGS KELNFSTKYS RSFFNQCIAC LWKQHWSYWR NPSYTAVRIL FTSFTALMFG TVFWDLGSRR RRKQDLFNAA
1001: GSMYASVLFL GIQNASVAQP VVSIERTVFY RERAAGMYSA FPYAFGQIVI ELPYILVQTV VFGVIAYGMI GFEWTIAKFF WYQFFMFFTL LYFTLYGMMT
1101: VAVTPNLSVA GIISNFFYAM WNLFSGFVVP KTRIPLWWRW YYYICPVSWT LYGLVASQFG DLTDELEENL TLEQFVKSYF GFESDFVPYV AIIVIAFCIL
1201: FAFIFAFSIK AFNFQRK

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.