Factsheet for PGSC0003DMT400005783

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005785	Potato	cytosol, peroxisome, plasma membrane	36.2	91.52
VIT_04s0008g04790.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	71.9	79.11
KRH61824	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	70.0	76.33
KRH52503	Soybean	cytosol, peroxisome, plasma membrane	69.87	76.24
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	54.62	75.64
GSMUA_Achr9P02950_001	Banana	plasma membrane	64.37	73.22
GSMUA_Achr6P34530_001	Banana	plasma membrane	60.19	72.1
PGSC0003DMT400048449	Potato	cytosol, peroxisome, plasma membrane	55.19	71.65
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	64.49	71.01
PGSC0003DMT400076208	Potato	plastid	64.68	70.97
Os01t0609300-01	Rice	plasma membrane	57.72	70.53
Os08t0384500-01	Rice	plasma membrane	33.99	70.38
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	55.32	70.2
KRH16029	Soybean	cytosol	64.24	70.15
EES03260	Sorghum	plasma membrane	56.65	69.92
Zm00001d011315_P002	Maize	plasma membrane	63.73	69.74
PGSC0003DMT400076209	Potato	plasma membrane	63.23	69.71
KRH05088	Soybean	endoplasmic reticulum	63.61	69.45
Os01t0609900-02	Rice	plasma membrane	60.76	69.16
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	63.42	69.06
TraesCS3D01G234400.1	Wheat	plasma membrane	63.29	68.78
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	63.23	68.71
HORVU3Hr1G053350.8	Barley	vacuole	63.35	68.7
TraesCS3A01G217900.1	Wheat	cytosol	63.1	68.57
KXG32865	Sorghum	plasma membrane	63.23	68.52
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	6.58	68.42
TraesCS7B01G292700.1	Wheat	plasma membrane	61.84	68.32
GSMUA_Achr9P01490_001	Banana	plasma membrane	64.3	68.05
HORVU7Hr1G092510.2	Barley	plasma membrane	62.03	68.01
Os01t0342750-01	Rice	plasma membrane	30.13	67.9
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	62.85	67.87
TraesCS7A01G391100.1	Wheat	plasma membrane	61.96	67.84
TraesCS7D01G386600.1	Wheat	plasma membrane	61.96	67.75
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	62.09	67.7
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	62.03	67.63
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	61.9	67.54
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	61.84	67.43
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	61.77	67.36
Os01t0609200-00	Rice	plasma membrane	62.41	67.35
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	62.28	67.26
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	61.2	67.15
HORVU7Hr1G092380.8	Barley	cytosol	61.33	66.97
Os01t0609000-00	Rice	plasma membrane	62.15	66.89
TraesCS7A01G391000.1	Wheat	plasma membrane	61.33	66.74
TraesCS3B01G523700.1	Wheat	mitochondrion	45.19	66.73
KXG32860	Sorghum	plasma membrane	61.77	66.71
TraesCS7D01G386500.1	Wheat	plasma membrane	61.27	66.67
TraesCSU01G097600.2	Wheat	plasma membrane	61.2	66.6
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	60.7	66.6
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	62.15	66.58
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	60.44	66.32
EER98908	Sorghum	cytosol, nucleus, plasma membrane	61.08	66.05
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	59.24	65.09
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	59.49	65.05
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	59.43	64.98
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	60.63	64.91
EER98758	Sorghum	cytosol, nucleus, plasma membrane	59.37	64.73
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	58.92	64.38
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	58.99	64.36
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	58.99	64.36
KXG20401	Sorghum	plasma membrane	59.05	64.34
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	58.99	64.28
Zm00001d044442_P036	Maize	plasma membrane	63.73	63.98
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	50.19	63.85
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	56.39	63.83
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	57.15	63.1
Os09t0333000-00	Rice	plasma membrane	31.96	62.19
Os09t0332300-00	Rice	plasma membrane	32.03	61.26
PGSC0003DMT400068277	Potato	cytosol	50.82	60.1
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	46.9	58.9
PGSC0003DMT400050158	Potato	cytosol, peroxisome, plasma membrane	53.86	58.85
PGSC0003DMT400050166	Potato	plastid	51.77	58.76
TraesCS6D01G094800.1	Wheat	plasma membrane	34.18	58.32
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	28.99	58.2
PGSC0003DMT400067210	Potato	plasma membrane	51.71	58.07
PGSC0003DMT400060396	Potato	plastid	53.86	57.58
PGSC0003DMT400006729	Potato	plastid	53.67	56.53
Os01t0516900-00	Rice	plasma membrane	25.0	56.27
PGSC0003DMT400060117	Potato	cytosol	35.76	55.66
PGSC0003DMT400046986	Potato	plasma membrane	28.92	51.35
VIT_04s0008g04840.t01	Wine grape	plasma membrane	36.27	51.21

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	ProteinID:AAN85372	ProteinID:AAN85372.1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:AY165021	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M0ZQF4	InterPro:P-loop_NTPase	InterPro:PDR_assoc
PFAM:PF00005	PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	EnsemblPlantsGene:PGSC0003DMG401002262	PGSC:PGSC0003DMG401002262
EnsemblPlants:PGSC0003DMT400005783	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF443	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI000296EF49	SEG:seg	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG401002262]

Coordinates

chr8:+:41606331..41613682

Molecular Weight (calculated)

178775.0 Da

IEP (calculated)

6.456

GRAVY (calculated)

0.027

Length

1580 amino acids

Sequence
(BLAST)

0001: MEGGENILRV SSARLSGSNV WRNSAMDVFS RSSSREDYDD EEALRWAALE KLPTYRRIRR GLLLEEEEGQ SREVDITKLD LIERRNLLDR LVKIADEDNE
0101: KLLMKLKQRI DRVGLDLPTI EVRFEHLNID AEARVGSRAL PTIFNFTVNI LEDFLNYLHI LPSRKKPLPI LHGVGGIIKP GRMTLLLGPP SSGKTTLLLA
0201: LAGKLDNDLK VSGRVTYNGH GMDEFVPQRT SAYISQNDLH IGEMTVRETL AFSARCQGVG TKYEILAELS RREKEANIKP DPDIDIFMKS AWNEGQEANV
0301: ITDYTLKILG LEICADTLVG DEMIRGISGG QRKRLTTGRV TYNGHGMDEF VPQRTSAYIS QNDLHIGEMT VRETLAFSAR CQGVGTKYEI LAELSRREKE
0401: ANIKPDPDID IFMKSAWNEG QEANVITDYT LKILGLEICA DTLVGDEMIR GISGGQRKRL TTGEMMVGPA RALFMDEIST GLDSSTTYQI VNSIRQSIHI
0501: LQGTAVISLL QPAPETYDLF DDIILLSDGQ IVYQGPRENV LEFFEYLGFK CPQRKGVADF LQEVTSRKDQ EQYWSRRDEP YRFITACEFS DVFQSFDVGR
0601: KLGDELAVPF DKSKSHPAAL TTKRYGISKK ELLKACTARE YLLMKRNSFV YIFKMVQLTL MASIAMTLFL RTEMHRDTTI DGAIYLGALF YAVITIMFNG
0701: FSELALSIMK LPSFYKQRDF LFFPAWAYAL PTWILKIPIT LVEIAIWVCM TYYVIGFEAD VGRFFKQIFL LICLSQMASG LFRFLAALGR NIIVANTFGS
0801: CALLIVLVMG GFILSRDDVK QWLIWGYWIS PMMYAQNAIA VNEFLGKSWA HVPPNSTGTD TLGVSFLKSR GIFPEARWYW IGAGALFGYV LLFNFLFTVA
0901: LAYLNPFSKP QAILSEEIVA ERNASKRGEV IELSPIGKSS SERGNDVPVS TSSRSLSTRV GNITEGDLNK RKGMILPFEP LSITFDDIRY AVDMPQEMKT
1001: QGFIEDRLEL LKGVSGAFRP GVLTALMGVS GAGKTTLMDV LAGRKTGGYV EGTISISGYP KQQETFARIS GYCEQTDIHS PHVTVYESLL YSAWLRLPRE
1101: VDTETRKSFI EEVMELVELT PLREALVGLP GVNGLSTEQR KRLTVAVELV ANPSIIFMDE PTSGLDARAA AIVMRTVRNT VDTGRTVVCT IHQPSIDIFD
1201: AFDELLLLKR GGEEIFVGPL GRHSSHLIKY FEGIDGVLKI RDGYNPATWM LEVTSLAQEA VLGIDFTELY KNSELYRRNK ALIQELSVPA SGSKDLYFET
1301: KYSQSFFTQC MACLWKQHWS YWRNPPYTAV RLMFTFFVSL MLGTIFWGLG SKRGKQQDIL NAIGSMYAAI LFLGIINASS VQPVVAIERT VFYRERAAGM
1401: YSALPYAFGQ VMIELPHLFL QTIIYGVIVY AMIGFEWTVT KFFWYLFFMY FTLLYFTLYG MMTVAVTPNH TIASIVSSAF YTIWNLFCGF VVPKTRMPVW
1501: WRWYYYICPL SWTLYGLIAS QFGDLQDRLD TKETVEEFLE NFFDYKHDFV GYVAVILVGI SVVFLFIFAY SIKSFNFQKR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.