Factsheet for PGSC0003DMT400006729

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120980.2.1	Tomato	plastid	97.67	97.67
CDY69529	Canola	plasma membrane	36.4	76.47
TraesCS7B01G271500.1	Wheat	cytosol	30.87	75.41
CDX67921	Canola	plasma membrane, plastid	69.73	75.25
KRH23404	Soybean	plasma membrane	74.2	74.85
GSMUA_Achr9P16240_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	74.73	74.73
CDY70099	Canola	cytosol	21.27	74.19
Bra003527.1-P	Field mustard	plasma membrane, plastid	71.13	74.1
Os06t0554800-01	Rice	plasma membrane	57.2	73.52
CDY30162	Canola	plasma membrane	43.47	73.34
CDY39621	Canola	plastid	69.93	73.05
OQU76555	Sorghum	mitochondrion, plasma membrane	62.93	73.01
HORVU7Hr1G088630.1	Barley	vacuole	63.13	72.85
AT1G59870.1	Thale cress	plasma membrane, plastid	71.33	72.84
AT3G16340.1	Thale cress	plasma membrane	68.67	72.74
CDX97743	Canola	plasma membrane	68.47	72.68
CDY36534	Canola	plastid	69.4	72.54
Bra026156.1-P	Field mustard	plastid	69.67	72.37
GSMUA_Achr11P...	Banana	plasma membrane	68.93	71.81
Bra021173.1-P	Field mustard	plasma membrane	67.47	71.62
Bra016669.1-P	Field mustard	plastid	68.47	71.47
CDY20193	Canola	plasma membrane, plastid	65.67	71.07
TraesCS7A01G356200.1	Wheat	plasma membrane	56.47	71.0
CDX83991	Canola	plastid	69.07	70.57
Zm00001d036986_P002	Maize	plasma membrane	69.6	69.23
Zm00001d046277_P002	Maize	cytosol, nucleus, plasma membrane	70.4	68.57
CDY68747	Canola	plastid	38.8	68.07
CDY69102	Canola	plastid	38.53	67.84
EES01392	Sorghum	cytosol, peroxisome, plasma membrane	63.6	64.42
Zm00001d043598_P003	Maize	cytosol, nucleus, plasma membrane	63.87	64.38
PGSC0003DMT400005785	Potato	cytosol, peroxisome, plasma membrane	26.73	64.16
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	50.67	61.04
PGSC0003DMT400076209	Potato	plasma membrane	57.93	60.64
PGSC0003DMT400068277	Potato	cytosol	53.13	59.66
PGSC0003DMT400076208	Potato	plastid	57.07	59.44
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	56.4	58.95
PGSC0003DMT400050166	Potato	plastid	54.4	58.62
PGSC0003DMT400048449	Potato	cytosol, peroxisome, plasma membrane	46.6	57.44
PGSC0003DMT400050158	Potato	cytosol, peroxisome, plasma membrane	54.73	56.78
PGSC0003DMT400060396	Potato	plastid	55.67	56.5
PGSC0003DMT400067210	Potato	plasma membrane	51.33	54.73
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	5.53	54.61
PGSC0003DMT400005783	Potato	cytosol, peroxisome, plasma membrane	56.53	53.67
PGSC0003DMT400060117	Potato	cytosol	36.27	53.6
Bra027171.1-P	Field mustard	plasma membrane	68.4	53.38
PGSC0003DMT400046986	Potato	plasma membrane	31.33	52.81

Protein Annotations

EntrezGene:102578847	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	InterPro:IPR003439	UniProt:M0ZRW4	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	EnsemblPlantsGene:PGSC0003DMG400002613	PGSC:PGSC0003DMG400002613	EnsemblPlants:PGSC0003DMT400006729
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF224	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI000296967D	RefSeq:XP_006343042.1	SEG:seg	:	:	:

Description

PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8) [Source:PGSC_GENE;Acc:PGSC0003DMG400002613]

Coordinates

chr3:+:60312190..60321561

Molecular Weight (calculated)

170098.0 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.014

Length

1500 amino acids

Sequence
(BLAST)

0001: MEGEKVNGGP RRLGSSRSSL SRTMSRSRSR ASWMVEDVFN PMPSRRSTRG EEDEEALTWA ALERLPTYDR LRKTVLKSFA ESENQGNRKV VHKEVDVRNL
0101: GINERQEFID RFFRVAEEDN EKFLRKFRNR IDKVGITLPT VEVRYEHLTI EADCYIGDRA LPSLPNAARN IAESALSCVG LNLAEKTKLT ILKDASGIIK
0201: PSRMTLLLGP PSSGKTTLLL ALAGKLDPSL KVKGEITYNG HGLKEFVPQK TSAYISQNDV HVAEMTVKET LDFSARCQGV GSRYELLTEL ARRERDAGIF
0301: PEAEIDLFMK ATAVEGLESS LITDYTLRIL GLDVCRDTIV GDEMIRGISG GQKKRVTTGE MIVGPTKTLF MDEISTGLDS STTFQIVKCL QQIVHLTEAT
0401: ILMSLLQPAP ETFDLFDDII LLSEGQIVYQ GPREHVLEFF ETCGFKCPER KGTADFLQEV TSKKDQEQYW VNKHMPYQYI SVSEFAKRFK RFHVGLRIEN
0501: ELSVPYDKTR SHPAALIFKK YTVPTLELLK TNFDKEWLLI KRNSFVYIFK TVQIVIVALI ASTVFLRTKM HHENEDDGGV YVGALIFGMV INMFNGFSEL
0601: SLIIQRLPVF YKHRDLLFHP PWTFTLPTVL LKVPISVLET IVWMVMTYYT IGFAPEASRF FKQSLLVFLI QQMAAGLFRL TAGVCRTMII ANTGGALTLL
0701: LVFLLGGFIL PRGSIPDWWR WGFWVSPLSY GFNAFTVNEM FAPRWMNRPA SDGITRLGMQ VMRNFDVFAE KRWFWIGAAA LLGFTILFNV LFTFVLMYLS
0801: PLNKPQAILS KEQARDMEAD QEESRDPPRL RVNRSKRDDL PRSLSAADGN RTREMEIRRM SSRTGSIGLH RNDDANLEAA NGVAAKKGMI LPFTPLAMSF
0901: EDVSYFVDMP PEMRDQGVTE DRLQLLREVT GAFRPGVLTA LMGVSGAGKT TLMDVLAGRK TGGYIEGDVR ISGFPKNQET FARVSGYCEQ TDIHSPQVTI
1001: HESLLFSAFL RLPKEVKNED KMVFVDEVMD LVELDNLKDA IVGLPGVTGL STEQRKRLTI AVELVANPSI IFMDEPTSGL DARAAAIVMR TVRNTVDTGR
1101: TVVCTIHQPS IDIFEAFDEL LLMKRGGQVI YAGPLGRHSQ KIIEYFEAIP GVQKIKEKYN PATWMLEASS ISTETRLGMD FAEYYRSSAL HQRNKALVND
1201: LSAPPPGAKD LNFTTQYSQP TWGQFKSCLW KQWWTYWRSP DYNLVRFFFS LAAALMIGTI FWNVGSKIES SSDLMIVIGA MYAAVLFVGI NNCSTVQPIV
1301: AVERTVFYRE RAAGMYSALP YAMAQVIAEI PYILIQTTYY TLIVYAMIGF EWTAAKFFWF YFVTFFSFLY WTYYGMMTVS ITPNHQVAAI FAAAFYALFN
1401: LFSGFFIPRP RIPKWWIWYY WICPVAWTVY GCIVSQYGDV EATIIVPNMS PNPMIKDYIK DHFGYNPDFM APVAVVLVGF AVFFAFMYSY AIKTLNFQTR

Best Arabidopsis Sequence Match ( AT1G59870.1 )
(BLAST)

0001: MDYNPNLPPL GGGGVSMRRS ISRSVSRASR NIEDIFSSGS RRTQSVNDDE EALKWAAIEK LPTYSRLRTT LMNAVVEDDV YGNQLMSKEV DVTKLDGEDR
0101: QKFIDMVFKV AEQDNERILT KLRNRIDRVG IKLPTVEVRY EHLTIKADCY TGNRSLPTLL NVVRNMGESA LGMIGIQFAK KAQLTILKDI SGVIKPGRMT
0201: LLLGPPSSGK TTLLLALAGK LDKSLQVSGD ITYNGYQLDE FVPRKTSAYI SQNDLHVGIM TVKETLDFSA RCQGVGTRYD LLNELARREK DAGIFPEADV
0301: DLFMKASAAQ GVKNSLVTDY TLKILGLDIC KDTIVGDDMM RGISGGQKKR VTTGEMIVGP TKTLFMDEIS TGLDSSTTFQ IVKCLQQIVH LNEATVLMSL
0401: LQPAPETFDL FDDIILVSEG QIVYQGPRDN ILEFFESFGF KCPERKGTAD FLQEVTSKKD QEQYWVNPNR PYHYIPVSEF ASRYKSFHVG TKMSNELAVP
0501: FDKSRGHKAA LVFDKYSVSK RELLKSCWDK EWLLMQRNAF FYVFKTVQIV IIAAITSTLF LRTEMNTRNE GDANLYIGAL LFGMIINMFN GFAEMAMMVS
0601: RLPVFYKQRD LLFYPSWTFS LPTFLLGIPS SILESTAWMV VTYYSIGFAP DASRFFKQFL LVFLIQQMAA SLFRLIASVC RTMMIANTGG ALTLLLVFLL
0701: GGFLLPKGKI PDWWGWAYWV SPLTYAFNGL VVNEMFAPRW MNKMASSNST IKLGTMVLNT WDVYHQKNWY WISVGALLCF TALFNILFTL ALTYLNPLGK
0801: KAGLLPEEEN EDADQGKDPM RRSLSTADGN RRGEVAMGRM SRDSAAEASG GAGNKKGMVL PFTPLAMSFD DVKYFVDMPG EMRDQGVTET RLQLLKGVTG
0901: AFRPGVLTAL MGVSGAGKTT LMDVLAGRKT GGYIEGDVRI SGFPKVQETF ARISGYCEQT DIHSPQVTVR ESLIFSAFLR LPKEVGKDEK MMFVDQVMEL
1001: VELDSLRDSI VGLPGVTGLS TEQRKRLTIA VELVANPSII FMDEPTSGLD ARAAAIVMRA VRNTVDTGRT VVCTIHQPSI DIFEAFDELM LMKRGGQVIY
1101: AGPLGQNSHK VVEYFESFPG VSKIPEKYNP ATWMLEASSL AAELKLSVDF AELYNQSALH QRNKALVKEL SVPPAGASDL YFATQFSQNT WGQFKSCLWK
1201: QWWTYWRSPD YNLVRFIFTL ATSLLIGTVF WQIGGNRSNA GDLTMVIGAL YAAIIFVGIN NCSTVQPMVA VERTVFYRER AAGMYSAMPY AISQVTCELP
1301: YVLIQTVYYS LIVYAMVGFE WKAEKFFWFV FVSYFSFLYW TYYGMMTVSL TPNQQVASIF ASAFYGIFNL FSGFFIPRPK IPKWWIWYYW ICPVAWTVYG
1401: LIVSQYGDVE TRIQVLGGAP DLTVKQYIED HYGFQSDFMG PVAAVLIAFT VFFAFIFAFC IRTLNFQTR

Arabidopsis Description

ABCG36ABC transporter G family member 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIE2]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.