Factsheet for PGSC0003DMT400005785

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	17.76	73.03
Os01t0342750-01	Rice	plasma membrane	71.68	63.91
Os08t0384500-01	Rice	plasma membrane	72.0	58.98
Os09t0333000-00	Rice	plasma membrane	67.04	51.6
Os09t0332300-00	Rice	plasma membrane	66.72	50.48
TraesCS6D01G094800.1	Wheat	plasma membrane	64.0	43.2
VIT_04s0008g04840.t01	Wine grape	plasma membrane	76.96	42.98
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	76.32	41.81
Solyc08g067620.2.1	Tomato	nucleus	97.12	41.78
PGSC0003DMT400048449	Potato	cytosol, peroxisome, plasma membrane	77.76	39.93
PGSC0003DMT400046986	Potato	plasma membrane	54.24	38.09
TraesCS3B01G523700.1	Wheat	mitochondrion	63.2	36.92
PGSC0003DMT400005783	Potato	cytosol, peroxisome, plasma membrane	91.52	36.2
VIT_04s0008g04790.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	83.04	36.14
EES03260	Sorghum	plasma membrane	73.6	35.94
Os01t0609300-01	Rice	plasma membrane	73.12	35.34
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	68.8	34.62
GSMUA_Achr9P02950_001	Banana	plasma membrane	76.8	34.56
KRH52503	Soybean	cytosol, peroxisome, plasma membrane	80.0	34.53
KRH61824	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	79.04	34.09
Os01t0609900-02	Rice	plasma membrane	74.4	33.5
PGSC0003DMT400076208	Potato	plastid	75.84	32.92
GSMUA_Achr6P34530_001	Banana	plasma membrane	69.28	32.83
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	75.04	32.68
Zm00001d011315_P002	Maize	plasma membrane	74.08	32.06
PGSC0003DMT400076209	Potato	plasma membrane	73.12	31.89
KRH05088	Soybean	endoplasmic reticulum	73.76	31.86
HORVU3Hr1G053350.8	Barley	vacuole	74.08	31.78
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	73.76	31.77
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	73.6	31.77
TraesCS3D01G234400.1	Wheat	plasma membrane	73.76	31.71
KRH16029	Soybean	cytosol	73.28	31.65
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	73.6	31.64
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	73.92	31.58
TraesCS3A01G217900.1	Wheat	cytosol	73.44	31.57
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	63.52	31.56
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	73.12	31.54
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	73.12	31.54
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	72.48	31.46
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	72.48	31.46
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	72.8	31.4
KXG32865	Sorghum	plasma membrane	73.12	31.34
GSMUA_Achr9P01490_001	Banana	plasma membrane	74.72	31.28
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	72.48	31.26
TraesCS7B01G292700.1	Wheat	plasma membrane	71.52	31.26
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	71.84	31.18
HORVU7Hr1G092510.2	Barley	plasma membrane	71.52	31.02
Os01t0609000-00	Rice	plasma membrane	72.8	30.99
TraesCS7A01G391100.1	Wheat	plasma membrane	71.52	30.98
Os01t0609200-00	Rice	plasma membrane	72.48	30.94
TraesCS7D01G386600.1	Wheat	plasma membrane	71.52	30.93
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	71.52	30.87
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	71.52	30.87
EER98908	Sorghum	cytosol, nucleus, plasma membrane	72.16	30.87
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	72.8	30.85
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	71.52	30.83
HORVU7Hr1G092380.8	Barley	cytosol	71.36	30.82
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	70.72	30.74
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	71.04	30.73
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	70.88	30.66
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	71.52	30.55
TraesCSU01G097600.2	Wheat	plasma membrane	70.88	30.51
TraesCS7A01G391000.1	Wheat	plasma membrane	70.88	30.51
EER98758	Sorghum	cytosol, nucleus, plasma membrane	70.72	30.5
TraesCS7D01G386500.1	Wheat	plasma membrane	70.72	30.44
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	71.68	30.35
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	69.92	30.22
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	69.12	30.19
KXG20401	Sorghum	plasma membrane	69.76	30.07
KXG32860	Sorghum	plasma membrane	69.92	29.87
Zm00001d044442_P036	Maize	plasma membrane	73.6	29.22
PGSC0003DMT400050166	Potato	plastid	64.96	29.17
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	64.64	28.94
PGSC0003DMT400067210	Potato	plasma membrane	63.68	28.29
PGSC0003DMT400050158	Potato	cytosol, peroxisome, plasma membrane	65.44	28.28
PGSC0003DMT400060396	Potato	plastid	66.24	28.01
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	55.52	27.87
PGSC0003DMT400068277	Potato	cytosol	58.08	27.17
PGSC0003DMT400006729	Potato	plastid	64.16	26.73
PGSC0003DMT400060117	Potato	cytosol	18.08	11.13
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	1.92	1.52
Os01t0516900-00	Rice	plasma membrane	0.48	0.43

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M0ZQF5
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF01061	EnsemblPlantsGene:PGSC0003DMG402002262	PGSC:PGSC0003DMG402002262	EnsemblPlants:PGSC0003DMT400005785
PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF437	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix
UniParc:UPI000296B84D	SEG:seg	:	:	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG402002262]

Coordinates

chr8:+:41628467..41631308

Molecular Weight (calculated)

71351.7 Da

IEP (calculated)

7.549

GRAVY (calculated)

0.142

Length

625 amino acids

Sequence
(BLAST)

001: MSSRVGNITE GDINKRKGMI LPFEPLSITF DDIRYAVDMP QEMKSQGFIE DRLELLKGVS GAFRPGVLTA LMGVSGAGKT TLMDVLAGRK TGGYIEGTIS
101: ISGYPKQQET FARIAGYCEQ TDIHSPHVTV YESLQYSAWL RLPREVDTET RKRFIEEVME LVELKPLREA LVGLPGVNGL STEQRKRLTV AVELVANPSI
201: IFMDEPTSGL DARAAAIVMR TVRNTVDTGR TVVCTIHQPS IDIFDAFDEL LLLKRGGEEI FVGPLGRHSS HLIKYFEGID GVPKIRDGYN PATWMLDITS
301: VAQEAALGVD FTELYRNSEL YRRNKALIKE LSVPAPGSKD LYFQTKYSQS FFTQSMACFW KQHWSYWRNP PYTAVRLLFT FFIALMFGTI FWDLGSKRRR
401: QQDILNAIGS MYASVLFLGV QNATSVQPVV AIERTVFYRE RAAGMYSALP YAFGQIMIEL PYIFIQTIIY GVIVYAMIGF EWTVAKFFWY LFFMYFTLLY
501: FTLYGMMTVA VTPNHSIAAI VSSAFYAVWN LFSGFIVPKT RMPVWWRWYY YICPISWTLY GLIASQFGDL QDKLETKETV EEFIESFFDF KYDFVGYVAV
601: ILVGISVLFL FIFAYSIKAF NFQKR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.