Factsheet for VIT_04s0008g04840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005785	Potato	cytosol, peroxisome, plasma membrane	42.98	76.96
Solyc12g019640.1.1	Tomato	plasma membrane	37.62	69.24
Os01t0342750-01	Rice	plasma membrane	38.52	61.48
Os08t0384500-01	Rice	plasma membrane	39.68	58.19
Os09t0333000-00	Rice	plasma membrane	37.8	52.09
Os09t0332300-00	Rice	plasma membrane	36.46	49.39
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	45.93	45.05
TraesCS6D01G094800.1	Wheat	plasma membrane	36.55	44.17
VIT_04s0008g04790.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	53.8	41.92
PGSC0003DMT400048449	Potato	cytosol, peroxisome, plasma membrane	44.5	40.92
GSMUA_Achr6P34530_001	Banana	plasma membrane	47.54	40.33
Solyc08g067620.2.1	Tomato	nucleus	51.83	39.92
Os01t0609300-01	Rice	plasma membrane	46.11	39.91
EES03260	Sorghum	plasma membrane	45.58	39.84
VIT_09s0002g05370.t01	Wine grape	mitochondrion, plasma membrane	50.58	39.83
KRH52503	Soybean	cytosol, peroxisome, plasma membrane	51.39	39.71
GSMUA_Achr9P02950_001	Banana	plasma membrane	49.24	39.67
KRH61824	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	51.03	39.41
TraesCS3B01G523700.1	Wheat	mitochondrion	37.53	39.25
Os01t0609900-02	Rice	plasma membrane	47.81	38.54
VIT_09s0002g05560.t01	Wine grape	plasma membrane	50.04	38.51
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	42.45	38.24
GSMUA_Achr9P01490_001	Banana	plasma membrane	50.49	37.84
KRH05088	Soybean	endoplasmic reticulum	48.61	37.59
TraesCS3A01G217900.1	Wheat	cytosol	48.79	37.55
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	48.79	37.55
TraesCS3D01G234400.1	Wheat	plasma membrane	48.79	37.55
KRH16029	Soybean	cytosol	48.53	37.53
HORVU3Hr1G053350.8	Barley	vacuole	48.7	37.41
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	48.35	37.36
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	48.17	37.2
TraesCS7B01G292700.1	Wheat	plasma membrane	47.45	37.13
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	48.08	37.13
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	48.08	37.13
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	48.08	37.13
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	48.53	37.12
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	48.08	37.08
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	48.44	37.05
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	47.72	36.88
KXG32865	Sorghum	plasma membrane	47.99	36.83
HORVU7Hr1G092510.2	Barley	plasma membrane	47.36	36.78
Os01t0609200-00	Rice	plasma membrane	48.08	36.75
TraesCS7D01G386600.1	Wheat	plasma membrane	47.45	36.75
TraesCS7A01G391100.1	Wheat	plasma membrane	47.36	36.73
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	47.54	36.69
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	47.45	36.67
Zm00001d011315_P002	Maize	plasma membrane	47.27	36.63
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	47.01	36.53
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	48.08	36.47
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	46.83	36.39
HORVU7Hr1G092380.8	Barley	cytosol	47.01	36.35
EER98758	Sorghum	cytosol, nucleus, plasma membrane	47.01	36.3
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	46.65	36.3
EER98908	Sorghum	cytosol, nucleus, plasma membrane	47.36	36.28
PGSC0003DMT400005783	Potato	cytosol, peroxisome, plasma membrane	51.21	36.27
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	46.74	36.19
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	46.74	36.19
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	46.56	36.18
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	40.57	36.09
TraesCS7A01G391000.1	Wheat	plasma membrane	46.83	36.09
TraesCSU01G097600.2	Wheat	plasma membrane	46.83	36.09
TraesCS7D01G386500.1	Wheat	plasma membrane	46.74	36.02
Os01t0609000-00	Rice	plasma membrane	47.1	35.9
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	45.84	35.85
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	46.11	35.68
KXG32860	Sorghum	plasma membrane	46.65	35.68
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	46.74	35.43
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	43.79	35.1
KXG20401	Sorghum	plasma membrane	45.4	35.03
Zm00001d044442_P036	Maize	plasma membrane	48.17	34.24
VIT_08s0007g03710.t01	Wine grape	plastid	43.88	33.84
VIT_06s0061g01490.t01	Wine grape	plastid	43.34	33.36
VIT_06s0004g06560.t01	Wine grape	mitochondrion, plasma membrane	37.53	32.99
VIT_13s0074g00680.t01	Wine grape	plastid	42.27	32.05
VIT_14s0060g00470.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	37.89	29.28
Solyc12g019620.1.1	Tomato	cytosol, nucleus, plasma membrane	10.37	13.86
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	9.65	13.72
Os01t0516900-00	Rice	plasma membrane	6.88	10.97

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	Gene3D:4.10.60.10	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
ProteinID:CCB46771	ProteinID:CCB46771.1	UniProt:F6H3T4	EMBL:FN595231	InterPro:GAG-pre-integrase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006259	GO:GO:0006629
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015074
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR001878	InterPro:IPR003439	InterPro:IPR020846	InterPro:MFS_dom	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00098	PFAM:PF01061	PFAM:PF13976	PFAM:PF14223	PFscan:PS50158	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF437	SMART:SM00343	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF57756
TMHMM:TMhelix	UniParc:UPI00021086F5	ArrayExpress:VIT_04s0008g04840	EnsemblPlantsGene:VIT_04s0008g04840	EnsemblPlants:VIT_04s0008g04840.t01	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:4286954..4295631

Molecular Weight (calculated)

127255.0 Da

IEP (calculated)

9.212

GRAVY (calculated)

-0.173

Length

1119 amino acids

Sequence
(BLAST)

0001: MEGETIKIMN QDLVRLDRFD GSNFTRWQDK VRFLLTALKI FYILDPTLAP LPEPKENDTP QVVAARKKRE EDELICRGHI LNALSDRLYD LYTNTNSARE
0101: IWEALENKYK AEEEGTKKFL ISQYIDFKFF DEKPLLPQIH ELQVIVNKLK VLKIELPEAF QVGAIVAKLP SSWKGYRKRI LHKSEDYSLE EIQKHLRIKE
0201: ESRSRDKMVE ESNGGTNKAN AISKANHTRG KNNNNKKNSG NYMSPKKNQE QFKGKKGPCF VCGKPGHYAR ECRFRKDQKG VVVNAIDEEI IATLSDVCVV
0301: QGKVQGWWYD TCATVHVTYD KSLFKTFEDA KGDQEVQMGN EGKSKVLGKG TIEVVFTSGK KVTLKNVLYV PDMKKNLVSG DLLGKPGIKA VFESGKLILT
0401: KSGNFVGKGY SCDGMIKLST NDNINKMTST SAYMCDSNSL ILWHNRLAHV GLSTIKRIVK CGLIACDTKK FEKCEICIKS KMIKKPFHSV ERSSNLLDLI
0501: HSDLCELNGM LTRGRNRVGS ITEADQRRKR GMVLPFEPLS ISFDEIRYAV DMPQEMKAQG VTEDRLELLK GVSGSFRPGI LTALMGVTGA GKTTLMDVLA
0601: GRKTSGYIEG IIKQTDIHSP HVTVYESLIY SAWLRLPSEV DSATRKMFIE EVMELVELNS LREALVGLPS ENGLSTEQRK RLTIAVELVA NPSIIFMDEP
0701: TSGLDARAAA IVMRTVRNTV DTGRTVVCTI HQPSIDIFDA FDELLLLKRG GEEIYTGPIG HHSSHLIKYF EGINGISKIK DGYNPSTWML ELTSAAQEAA
0801: LGVNFTEEYK NSELYRRNKA LIKELSSPPP GSKDLYFSTQ YSQSFFTQCL ACLWKQHWSY WRNPAYTAVR LFFTTFIALM FGTIFWDSGS KRKRQQDLFN
0901: AMGSMYVSVI FIGIQNAFSV QAVVAIERTV FYRERAAGMY SAFPYAFGQV MIELPHIFIQ TIIFGLIVYA MVGFEWTVTK FFWYLFFMYF TFLYFTFYGM
1001: MAVAITPNQH ISGIVSSAFY GLWNLFSGFI IPHTRIPVWW KWYFWSCPVS WTLYGLVVTQ FGDIKERLES GERVEDFVRS YFGYRNDFVG VVAGIVVGIT
1101: VLFGFIFAYS IRAFNFQKR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.