Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 2
  • plasma membrane 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400005785 Potato cytosol, peroxisome, plasma membrane 41.78 97.12
VIT_04s0008g04790.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 79.56 80.5
KRH52503 Soybean cytosol, peroxisome, plasma membrane 77.22 77.49
KRH61824 Soybean cytosol, mitochondrion, peroxisome, plasma membrane 77.15 77.36
Solyc12g019640.1.1 Tomato plasma membrane 32.07 76.64
GSMUA_Achr1P14530_001 Banana mitochondrion, plasma membrane 59.12 75.28
GSMUA_Achr9P02950_001 Banana plasma membrane 69.58 72.79
GSMUA_Achr6P34530_001 Banana plasma membrane 65.45 72.1
KRH16029 Soybean cytosol 71.09 71.39
Solyc12g098210.1.1 Tomato plastid 69.86 71.23
Solyc09g091660.2.1 Tomato plastid 70.47 71.11
Os01t0609300-01 Rice plasma membrane 63.18 71.0
KRH05088 Soybean endoplasmic reticulum 70.68 70.97
Solyc02g055530.2.1 Tomato extracellular 2.82 70.69
Zm00001d011315_P002 Maize plasma membrane 70.13 70.57
EES03260 Sorghum plasma membrane 62.08 70.47
Os01t0609900-02 Rice plasma membrane 67.24 70.39
KXG32863 Sorghum cytosol, peroxisome, plasma membrane 69.79 69.88
Solyc05g053590.2.1 Tomato cytosol, mitochondrion, peroxisome, plasma membrane 67.86 69.83
Solyc12g100180.1.1 Tomato mitochondrion, nucleus, plasma membrane, plastid 68.82 69.69
Os01t0342750-01 Rice plasma membrane 33.52 69.47
TraesCS3D01G234400.1 Wheat plasma membrane 69.44 69.39
TraesCS3B01G248400.1 Wheat cytosol, peroxisome, plasma membrane 69.37 69.33
HORVU3Hr1G053350.8 Barley vacuole 69.51 69.32
TraesCS3A01G217900.1 Wheat cytosol 69.24 69.19
KXG32865 Sorghum plasma membrane 69.37 69.14
Os08t0384500-01 Rice plasma membrane 36.13 68.81
TraesCS2A01G483300.1 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 68.27 68.46
HORVU3Hr1G071470.1 Barley cytosol, mitochondrion, nucleus, plasma membrane 67.79 68.4
TraesCS3A01G218000.1 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 68.13 68.32
Zm00001d044443_P001 Maize cytosol, mitochondrion, nucleus, plasma membrane 68.0 68.23
Zm00001d011319_P003 Maize cytosol, mitochondrion, peroxisome, plasma membrane 68.62 68.15
EES03255 Sorghum cytosol, peroxisome, plasma membrane, plastid 68.62 68.15
TraesCS3B01G248500.1 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 67.93 68.12
TraesCS3D01G234300.2 Wheat cytosol, mitochondrion, peroxisome, plasma membrane 67.93 68.12
Os01t0609200-00 Rice plasma membrane 68.55 68.03
GSMUA_Achr9P01490_001 Banana plasma membrane 69.79 67.92
Os01t0609000-00 Rice plasma membrane 68.62 67.92
TraesCS3A01G272800.2 Wheat cytosol, mitochondrion, nucleus, plasma membrane 67.24 67.85
TraesCS7B01G292700.1 Wheat plasma membrane 66.76 67.83
TraesCS7A01G391100.1 Wheat plasma membrane 67.17 67.64
TraesCS7D01G386600.1 Wheat plasma membrane 67.17 67.54
TraesCS3D01G272200.2 Wheat cytosol, mitochondrion, nucleus, plasma membrane 66.9 67.5
HORVU7Hr1G092510.2 Barley plasma membrane 66.9 67.45
HORVU3Hr1G053380.1 Barley cytosol, mitochondrion, peroxisome, plasma membrane 68.2 67.19
TraesCS3B01G523700.1 Wheat mitochondrion 49.41 67.1
HORVU7Hr1G092380.8 Barley cytosol 66.62 66.9
KXG32860 Sorghum plasma membrane 67.17 66.71
TraesCS7A01G391000.1 Wheat plasma membrane 66.41 66.46
EER98908 Sorghum cytosol, nucleus, plasma membrane 66.76 66.39
TraesCS7D01G386500.1 Wheat plasma membrane 66.35 66.39
TraesCSU01G097600.2 Wheat plasma membrane 66.35 66.39
TraesCS3B01G306400.2 Wheat cytosol, mitochondrion, nucleus, plasma membrane 67.1 66.06
EER98758 Sorghum cytosol, nucleus, plasma membrane 65.31 65.49
TraesCS3D01G474700.1 Wheat cytosol, nucleus, plasma membrane 65.04 65.4
TraesCS3B01G524400.1 Wheat cytosol, peroxisome, plasma membrane 64.69 65.37
TraesCS3A01G479800.1 Wheat cytosol, nucleus, plasma membrane 64.83 65.19
TraesCS5B01G183500.1 Wheat cytosol, nucleus, plasma membrane 64.9 65.12
Zm00001d044442_P036 Maize plasma membrane 70.47 65.06
HORVU5Hr1G056280.6 Barley cytosol, nucleus, plasma membrane 64.83 64.97
TraesCS5D01G190600.1 Wheat cytosol, nucleus, plasma membrane 64.69 64.92
HORVU3Hr1G105140.4 Barley cytosol, peroxisome, plasma membrane 64.49 64.8
TraesCS2B01G149900.1 Wheat cytosol, peroxisome, plasma membrane 55.27 64.65
TraesCS5A01G185500.1 Wheat cytosol, nucleus, plasma membrane 61.87 64.4
KXG20401 Sorghum plasma membrane 64.21 64.34
TraesCS2D01G130000.1 Wheat cytosol, peroxisome, plasma membrane 62.7 63.66
Solyc12g019620.1.1 Tomato cytosol, nucleus, plasma membrane 36.55 63.44
Solyc05g018510.2.1 Tomato cytosol, peroxisome, plasma membrane 60.5 61.86
Os09t0333000-00 Rice plasma membrane 34.48 61.7
Os09t0332300-00 Rice plasma membrane 34.48 60.65
Solyc11g007280.1.1 Tomato plastid 60.36 59.74
Solyc11g007300.1.1 Tomato plastid 59.46 59.02
TraesCS6A01G107100.1 Wheat mitochondrion, plasma membrane 50.86 58.74
TraesCS2A01G127800.1 Wheat cytosol, peroxisome, plasma membrane 31.8 58.7
Solyc06g065670.2.1 Tomato plasma membrane 56.71 58.52
Solyc11g067000.1.1 Tomato extracellular, plastid 58.77 58.37
Solyc05g055330.2.1 Tomato plastid 59.05 58.05
TraesCS6D01G094800.1 Wheat plasma membrane 36.75 57.67
Solyc03g120980.2.1 Tomato plastid 58.84 57.0
Os01t0516900-00 Rice plasma membrane 26.77 55.41
Solyc06g076930.1.1 Tomato nucleus 53.06 54.11
Solyc02g081870.2.1 Tomato unclear 52.1 54.03
VIT_04s0008g04840.t01 Wine grape plasma membrane 39.92 51.83
Solyc01g101070.2.1 Tomato plastid 51.2 51.42
Protein Annotations
MapMan:24.1.3.2.2Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABCG_PDR_1InterPro:ABCG_PDR_2InterPro:ABC_2_trans
InterPro:ABC_trans_NInterPro:ABC_transporter-likeGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887GO:GO:0042626
GO:GO:0055085InterPro:IPR003439UniProt:K4CLY8InterPro:P-loop_NTPaseInterPro:PDR_assocPFAM:PF00005
PFAM:PF01061PFAM:PF08370PFAM:PF14510PFscan:PS50893PANTHER:PTHR19241PANTHER:PTHR19241:SF443
SMART:SM00382SUPFAM:SSF52540EnsemblPlantsGene:Solyc08g067620.2EnsemblPlants:Solyc08g067620.2.1TMHMM:TMhelixUniParc:UPI000276C47B
SEG:seg:::::
Description
No Description!
Coordinates
chr8:+:56633138..56639683
Molecular Weight (calculated)
164635.0 Da
IEP (calculated)
7.569
GRAVY (calculated)
0.060
Length
1453 amino acids
Sequence
(BLAST)
0001: MEGGGDILKV SSARLGSSTV WRNSGVDVFS RSSREDYDDE EALKWAALEK LPTYLRIRRG ILSEEEGQYR EVDITKLDLV ERRNLLERLV KIADEDNEKF
0101: LLKLKKRIDR VGLDLPTIEV RFEHLNVDAE ARVGSRALPT IFNFTVNIIE DFLNYLHILP SRKKPLPILH EISGIIKPGR MTLLLGPPSS GKTTLLLGLA
0201: GKLDKDLKVS GRVTYNGHGM DEFVPQRTSA YISQNDLHIG EMTVRETLAF SARCQGVGAK YEILAELSRR EKEANIKPDP DVDIFMKSAW NDGQEANVVT
0301: DYTLKILGLE ICADTIVGDE MIRGISGGQR KRLTTGEMMV GPARALFMDE ISTGLDSSTT YQIVNSIRQS IHILQGTAVI SLLQPAPETY DLFDDIILLS
0401: DGQIVYQGPR ENVLEFFEYI GFKCPQRKGV ADFLQEVTSR KDQEQYWARR DEPYKFITVR EFSEAFQSFH VGRKLGDELA VPFDKSKSHP AALTTERYGV
0501: SKKELLKACT AREYLLMKRN SFVYIFKMIQ LTLMATITMT LFLRTEMHRD TMIDGAVFLG ALYYAVIMIM FNGFSELALS IMKLPSFYKH RDLLFFPAWT
0601: YALPTWILKI PITLVEVAIW VCMTYYVIGF EADVGRFFKQ LFLLICLNQM ASGLFRFLAA LGRNVIVANT FGSCALLIVL VMGGFILSRD NVKQWLIWGY
0701: WISPMMYAQN AIAVNEFLGK SWAHVPPNST GTDTLGVSFL KSRGIFPEAR WYWIGVGALL GYVLLFNFLF TVALAYLNPF GKPQAVLSEE TVAERNASKR
0801: GEVIELSPIG KSSSERGNDV RRSASSRSMS SRVGNIAEGD LNKRKGMILP FEPLSITFDD IRYAVDMPQE MKAQGFTEDR LELLKGVSGA FRPGVLTALM
0901: GVSGAGKTTL MDVLAGRKTG GYIEGTISIS GYPKQQATFA RIAGYCEQTD IHSPHVTVYE SLQYSAWLRL PREVDTETRK RFIEEVMELV ELKPLREALV
1001: GLPGVNGLST EQRKRLTVAV ELVANPSIIF MDEPTSGLDA RAAAIVMRTV RNTVDTGRTV VCTIHQPSID IFDAFDELLL LKRGGEEIFV GPLGRHSSHL
1101: IKYFEGIDGV LKIKDGYNPA TWMLDITSVA QEAALGIDFT ELYRNSELYR RNKALIQELS VPAPGSKDLY FETKYSQSFF TQSMACFWKQ HWSYWRNPPY
1201: TAVRLMFTFF IALMFGTIFW DLGSKRRRQQ DILNAIGSMY AAVLFLGVQN ATSVQPVVAI ERTVFYRERA AGMYSALPYA FGQIMIELPY IFIQTIIYGV
1301: IVYAMIGFEW TVAKFIWYLF FMYFTLLYFT LYGMMTVAVT PNHSIAAIIS SAFYAVWNLF SGFIVPKTRM PVWWRWYFYI CPISWTLYGL VASQFGDLQD
1401: KLETKETVEE FIESFFDFKY DFVGYVALIL VGISVGFLFI FAYSIKAFNF QKR
Best Arabidopsis Sequence Match ( AT2G26910.1 )
(BLAST)
0001: MWNSAENAFS RSTSFKDEIE DEEELRWAAL QRLPTYSRIR RGIFRDMVGE PKEIQIGNLE ASEQRLLLDR LVNSVENDPE QFFARVRKRF DAVDLKFPKI
0101: EVRFQNLMVE SFVHVGSRAL PTIPNFIINM AEGLLRNIHV IGGKRNKLTI LDGISGVIRP SRLTLLLGPP SSGKTTLLLA LAGRLGTNLQ TSGKITYNGY
0201: DLKEIIAPRT SAYVSQQDWH VAEMTVRQTL EFAGRCQGVG FKYDMLLELA RREKLAGIVP DEDLDIFMKS LALGGMETSL VVEYVMKILG LDTCADTLVG
0301: DEMIKGISGG QKKRLTTGEL LVGPARVLFM DEISNGLDSS TTHQIIMYMR HSTHALEGTT VISLLQPSPE TYELFDDVIL MSEGQIIYQG PRDEVLDFFS
0401: SLGFTCPDRK NVADFLQEVT SKKDQQQYWS VPFRPYRYVP PGKFAEAFRS YPTGKKLAKK LEVPFDKRFN HSAALSTSQY GVKKSELLKI NFAWQKQLMK
0501: QNAFIYVFKF VQLLLVALIT MTVFCRTTMH HNTIDDGNIY LGSLYFSMVI ILFNGFTEVP MLVAKLPVLY KHRDLHFYPS WAYTLPSWLL SIPTSIIESA
0601: TWVAVTYYTI GYDPLFSRFL QQFLLYFSLH QMSLGLFRVM GSLGRHMIVA NTFGSFAMLV VMTLGGFIIS RDSIPSWWIW GYWISPLMYA QNAASVNEFL
0701: GHNWQKTAGN HTSDSLGLAL LKERSLFSGN YWYWIGVAAL LGYTVLFNIL FTLFLAHLNP WGKFQAVVSR EELDEREKKR KGDEFVVELR EYLQHSGSIH
0801: GKYFKNRGMV LPFQPLSLSF SNINYYVDVP LGLKEQGILE DRLQLLVNIT GAFRPGVLTA LVGVSGAGKT TLMDVLAGRK TGGTIEGDVY ISGFPKRQET
0901: FARISGYCEQ NDVHSPCLTV VESLLFSACL RLPADIDSET QRAFVHEVME LVELTSLSGA LVGLPGVDGL STEQRKRLTI AVELVANPSI VFMDEPTSGL
1001: DARAAAIVMR TVRNIVNTGR TIVCTIHQPS IDIFESFDEL LFMKRGGELI YAGPLGQKSC ELIKYFESIE GVQKIKPGHN PAAWMLDVTA STEEHRLGVD
1101: FAEIYRNSNL CQRNKELIEV LSKPSNIAKE IEFPTRYSQS LYSQFVACLW KQNLSYWRNP QYTAVRFFYT VVISLMLGTI CWKFGSKRDT QQQLFNAMGS
1201: MYAAVLFIGI TNATAAQPVV SIERFVSYRE RAAGMYSALP FAFAQVFIEF PYVLAQSTIY STIFYAMAAF EWSAVKFLWY LFFMYFSIMY FTFYGMMTTA
1301: ITPNHNVASI IAAPFYMLWN LFSGFMIPYK RIPLWWRWYY WANPVAWTLY GLLVSQYGDD ERSVKLSDGI HQVMVKQLLE DVMGYKHDFL GVSAIMVVAF
1401: CVFFSLVFAF AIKAFNFQRR
Arabidopsis Description
ABCG32PEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNA5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.