Factsheet for Solyc11g007300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050166	Potato	plastid	93.44	98.28
CDY65389	Canola	cytosol	4.23	77.5
Solyc05g055330.2.1	Tomato	plastid	73.57	72.87
VIT_13s0074g00680.t01	Wine grape	plastid	72.68	72.09
Solyc11g007280.1.1	Tomato	plastid	71.79	71.59
CDX79673	Canola	cytosol, peroxisome, plasma membrane	59.43	71.25
Solyc11g067000.1.1	Tomato	extracellular, plastid	70.29	70.33
KRH34743	Soybean	plasma membrane	57.45	69.62
CDY43723	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	69.06	69.58
AT2G36380.1	Thale cress	cytosol, mitochondrion, peroxisome, plasma membrane	68.92	69.44
AT1G66950.1	Thale cress	plastid	68.51	68.98
KRH71633	Soybean	nucleus	69.54	68.78
Bra023065.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	66.8	68.44
KRG92040	Soybean	extracellular	68.17	67.71
Solyc02g055530.2.1	Tomato	extracellular	2.6	65.52
TraesCS5A01G447200.1	Wheat	plasma membrane	53.83	63.34
TraesCS5D01G023400.1	Wheat	plasma membrane	35.52	62.73
Os02t0318500-00	Rice	plasma membrane	19.54	62.58
Os07t0522500-01	Rice	plasma membrane	21.24	62.58
Solyc05g053590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane	59.36	61.54
Solyc12g019640.1.1	Tomato	plasma membrane	25.48	61.35
Solyc12g098210.1.1	Tomato	plastid	59.49	61.12
GSMUA_Achr8P07660_001	Banana	mitochondrion, peroxisome, plasma membrane	64.55	61.09
HORVU7Hr1G037750.8	Barley	cytosol, plasma membrane	46.31	61.03
Solyc09g091660.2.1	Tomato	plastid	59.9	60.9
Solyc12g100180.1.1	Tomato	mitochondrion, nucleus, plasma membrane, plastid	59.63	60.84
TraesCS5A01G016200.1	Wheat	mitochondrion	59.43	60.63
TraesCS5B01G572600.1	Wheat	plastid	60.11	60.56
TraesCS7A01G183900.1	Wheat	plasma membrane	56.76	60.22
TraesCS4A01G331100.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	59.36	60.18
TraesCS5D01G452500.1	Wheat	plastid	59.63	60.17
TraesCS5B01G449500.1	Wheat	plastid	59.7	60.15
CDX84561	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	67.01	60.15
HORVU5Hr1G124650.12	Barley	plasma membrane	31.08	59.95
TraesCS5D01G564000.1	Wheat	plastid	59.56	59.93
TraesCS7B01G000200.1	Wheat	plastid	59.49	59.78
KXG37059	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	57.31	59.76
TraesCS7D01G185700.2	Wheat	plasma membrane	53.83	59.74
TraesCS2B01G606700.2	Wheat	plastid	59.56	59.64
Solyc08g067620.2.1	Tomato	nucleus	59.02	59.46
Zm00001d021647_P003	Maize	plastid	58.61	59.34
KXG36359	Sorghum	plastid	59.02	59.3
TraesCS7B01G088800.1	Wheat	plastid	58.67	59.2
TraesCS2D01G051800.1	Wheat	plasma membrane	55.81	58.36
HORVU5Hr1G106850.1	Barley	cytosol	59.63	58.36
Zm00001d025012_P003	Maize	plastid	58.27	58.07
Zm00001d009037_P003	Maize	plastid	57.92	57.88
Zm00001d034940_P003	Maize	plastid	57.92	56.91
Os11t0587600-01	Rice	plasma membrane	25.82	56.84
Solyc03g120980.2.1	Tomato	plastid	57.72	56.33
Solyc05g018510.2.1	Tomato	cytosol, peroxisome, plasma membrane	53.76	55.38
Solyc06g065670.2.1	Tomato	plasma membrane	52.66	54.76
Solyc02g081870.2.1	Tomato	unclear	50.96	53.25
Solyc06g076930.1.1	Tomato	nucleus	51.37	52.77
Solyc12g019620.1.1	Tomato	cytosol, nucleus, plasma membrane	29.92	52.33
Solyc01g101070.2.1	Tomato	plastid	50.41	51.0
Bra017241.1-P	Field mustard	cytosol, mitochondrion, nucleus, plasma membrane	69.06	44.54
Os07t0522600-02	Rice	plasma membrane	0.14	0.31

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	UniProt:K4D4Z1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF261
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g007300.1	EnsemblPlants:Solyc11g007300.1.1	TMHMM:TMhelix	UniParc:UPI000276A27E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:1680009..1686686

Molecular Weight (calculated)

166350.0 Da

IEP (calculated)

8.162

GRAVY (calculated)

0.006

Length

1464 amino acids

Sequence
(BLAST)

0001: MASSMRENEL VRSMSKKPSF SSASRRGSWA SASLREAFGA PGGDVFVKSG RQDDEDELKW AAIERLPTYD RMRKGILKQV LDNGRIVHEQ VDVAHMGMHE
0101: KKQLMENILN GIDEDNERFL LRLKDRIERV GIDIPKIEIR FEHLSIEGDA YVGSRALPTL WNSTINSLEG LLGLVRLSPS KKKSVKILDD ISGIVKPSKM
0201: TLLLGPPASG KTTLLKALAG KLEQDLRVKG KVTHCGHELK EFIPQRTCAY ICQHDLHHGE MTVRETLDFS GRCFGVGARY ELLAELSRRE KESGIKPDPE
0301: VDAFMKAISV AGQKTNLVTD SVLKILGLDI CSDTMVGDEM RRGISGGQKK RVTTGEMLVG PAKVFLMDEI STGLDSSTTF QIVKYMRQMV HIMNVTMIIS
0401: LLQPAPETFD LFDEIILLSE GQVVYQGPRE NVLEFFESVG FKCPERKGVA DFLQEVTSKK DQEQYWSKKN VPYQFVSVRD FVEHFKSFHL GLKLFGEVQV
0501: PYDRSRTHPA ALVKAKYGIS NKELFKACLS REWLLMKRNS FVYIFKTVQI TIMAIFTFTV FFRTKMKHGE AEDGGKFYGA LFFSLLNVMF NGMAELAMTI
0601: FRLPVFFKQR DALFYPAWAF ALPIWLLRIP ISLMESGIWI LLTYYTVGFA PAADRFFRQY LAYVGIHQMA LGLFRFIAAL GRTQVVANTL GTFTLLSVFV
0701: LGGFIIAKDD LQPWMKWAYY LSPMSYGQNA IVLVEFLDKR WNKPNEDPSF QGKTVGIELL KARGMFTEDI WYWICVIALF SFSLFFNLCF VAALTYLKPL
0801: GDTKSIMVNE EDSQNKEKKM KVTPHEGSGK NTSEDINSNS AASATNKKGM VLPFQPLSLS FEHVNYYVDM PAEMRSQGIE ETRLQLLREV SGAFRPGVLT
0901: ALMGVSGAGK TTLMDVLAGR KTGGYIEGSI CVSGYPKIQE TFARVSGYCE QNDIHSPHVT VYESLLYSAW LRLPSDVNNE TRMMFVEEVM ELVELTLLRN
1001: SLVGLPGVDG LSTEQRKRLT IAVELVANPS IIFMDEPTSG LDARAAAIVM RAVRNTVDTG RTVVCTIHQP SIDIFESFDE LFLLKRGGQV IYAGPLGRNS
1101: QHLIEYFESV PGVNKIKDGY NPATWMLEVS AASVETQFSI NFAEIYTNSD LYRRNEELNK ELSTPAPGSK DLYFPTKYSQ PLLTQFKACL WKQHWSYWRN
1201: PQYNVIRFFM TTVIGIIFGV IFWDKGGKFE KQQDLSNLMG AMYAAVLFLG GTNTSAVQSV VAIERTVFYR ERAAGMFSAL PYAFAQVTVE TIYVGIQTFL
1301: YSLILYSMIG FEWQADKFFW FYYYVFMCFV YFTLYGMMLV ALTPNYQIAA IVMSFFLSFW NLFSGFLIPR MQIPIWWRWY YWGSPVAWTI YGLITSQLGD
1401: KTELVHIPSH DGTPTYIQLK DYLKQYLDYD YDFLGAVAAA HLAWVLLFFF VFVYAIRVLN FQKR

Best Arabidopsis Sequence Match ( AT2G36380.1 )
(BLAST)

0001: MLGRDEDLVR TMSGRGSLGS TSHRSLAGAA SKSFRDVFAP PTDDVFGRSD RREEDDVELR WAALERLPTY DRLRKGMLPQ TMVNGKIGLE DVDVTNLAPK
0101: EKKHLMEMIL KFVEEDNEKF LRRLRERTDR VGIEVPKIEV RYENLSVEGD VRSASRALPT LFNVTLNTIE SILGLFHLLP SKKRKIEILK DISGIIKPSR
0201: MTLLLGPPSS GKTTLLQALA GKLDDTLQMS GRITYCGHEF REFVPQKTCA YISQHDLHFG EMTVRESLDF SGRCLGVGTR YQLLTELSRR EREAGIKPDP
0301: EIDAFMKSIA ISGQETSLVT DYVLKLLGLD ICADTLVGDV MRRGISGGQR KRLTTGEMLV GPATALFMDE ISTGLDSSTT FQICKFMRQL VHIADVTMVI
0401: SLLQPAPETF ELFDDIILLS EGQIVYQGSR DNVLEFFEYM GFKCPERKGI ADFLQEVTSK KDQEQYWNRR EHPYSYVSVH DFSSGFNSFH AGQQLASEFR
0501: VPYDKAKTHP AALVTQKYGI SNKDLFKACF DREWLLMKRN SFVYVFKTVQ ITIMSLIAMT VYFRTEMHVG TVQDGQKFYG ALFFSLINLM FNGMAELAFT
0601: VMRLPVFFKQ RDFLFYPPWA FALPGFLLKI PLSLIESVIW IALTYYTIGF APSAARFFRQ LLAYFCVNQM ALSLFRFLGA LGRTEVIANS GGTLALLVVF
0701: VLGGFIISKD DIPSWLTWCY YTSPMMYGQT ALVINEFLDE RWGSPNNDTR INAKTVGEVL LKSRGFFTEP YWFWICIGAL LGFTVLFNFC YIIALMYLNP
0801: LGNSKATTVV EEGKDKHKGS HSGTGGSVVE LTSTSSHGPK KGMVLPFQPL SLAFNNVNYY VDMPAEMKAQ GVEGDRLQLL RDVGGAFRPG VLTALVGVSG
0901: AGKTTLMDVL AGRKTGGYVE GSINISGYPK NQATFARVSG YCEQNDIHSP HVTVYESLIY SAWLRLSADI DTKTREMFVE EVMELVELKP LRNSIVGLPG
1001: VDGLSTEQRK RLTIAVELVA NPSIIFMDEP TSGLDARAAA IVMRTVRNTV DTGRTVVCTI HQPSIDIFES FDELLLMKRG GQVIYAGTLG HHSQKLVEYF
1101: EAIEGVPKIK DGYNPATWML DVTTPSMESQ MSVDFAQIFV NSSVNRRNQE LIKELSTPPP GSNDLYFRTK YAQPFSTQTK ACFWKMYWSN WRYPQYNAIR
1201: FLMTVVIGVL FGLLFWQTGT KIEKEQDLNN FFGAMYAAVL FLGATNAATV QPAVAIERTV FYREKAAGMY SAIPYAISQV AVEIMYNTIQ TGVYTLILYS
1301: MIGYDWTVVK FFWFYYYMLT CFVYFTLYGM MLVALTPNYQ IAGICLSFFL SFWNLFSGFL IPRPQIPIWW RWYYWASPVA WTLYGIITSQ VGDRDSIVHI
1401: TGVGDMSLKT LLKNGFGFDY DFLPVVAVVH IAWILIFLFA FAYGIKFLNF QRR

Arabidopsis Description

ABCG34ABC transporter G family member 34 [Source:UniProtKB/Swiss-Prot;Acc:Q7PC87]
SUBAcon: [mitochondrion,peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.