Factsheet for PGSC0003DMT400050166

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g007300.1.1	Tomato	plastid	98.28	93.44
CDY65389	Canola	cytosol	4.31	75.0
CDX79673	Canola	cytosol, peroxisome, plasma membrane	62.0	70.68
PGSC0003DMT400050158	Potato	cytosol, peroxisome, plasma membrane	72.56	69.85
KRH34743	Soybean	plasma membrane	60.42	69.62
PGSC0003DMT400060396	Potato	plastid	73.85	69.55
VIT_13s0074g00680.t01	Wine grape	plastid	72.77	68.63
PGSC0003DMT400068277	Potato	cytosol	65.45	68.19
CDY43723	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	69.4	66.48
AT2G36380.1	Thale cress	cytosol, mitochondrion, peroxisome, plasma membrane	69.11	66.21
AT1G66950.1	Thale cress	plastid	68.68	65.75
KRH71633	Soybean	nucleus	69.9	65.74
Bra023065.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	66.81	65.08
PGSC0003DMT400005785	Potato	cytosol, peroxisome, plasma membrane	29.17	64.96
KRG92040	Soybean	extracellular	68.61	64.79
PGSC0003DMT400060117	Potato	cytosol	46.48	63.74
TraesCS5A01G447200.1	Wheat	plasma membrane	56.54	63.26
Os02t0318500-00	Rice	plasma membrane	20.69	63.02
TraesCS5D01G023400.1	Wheat	plasma membrane	37.21	62.48
Os07t0522500-01	Rice	plasma membrane	22.27	62.37
HORVU7Hr1G037750.8	Barley	cytosol, plasma membrane	48.42	60.67
HORVU5Hr1G124650.12	Barley	plasma membrane	32.83	60.21
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	53.3	59.6
TraesCS7D01G185700.2	Wheat	plasma membrane	56.11	59.21
GSMUA_Achr8P07660_001	Banana	mitochondrion, peroxisome, plasma membrane	64.94	58.44
PGSC0003DMT400076209	Potato	plasma membrane	60.13	58.41
PGSC0003DMT400076208	Potato	plastid	60.27	58.26
TraesCS5B01G572600.1	Wheat	plastid	60.56	58.02
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	59.7	57.91
TraesCS5A01G016200.1	Wheat	mitochondrion	59.55	57.77
PGSC0003DMT400048449	Potato	cytosol, peroxisome, plasma membrane	50.36	57.6
KXG37059	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	57.97	57.48
TraesCS5D01G452500.1	Wheat	plastid	59.91	57.48
TraesCS5D01G564000.1	Wheat	plastid	60.06	57.46
TraesCS4A01G331100.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	59.55	57.41
TraesCS5B01G449500.1	Wheat	plastid	59.84	57.33
TraesCS7A01G183900.1	Wheat	plasma membrane	56.75	57.25
TraesCS7B01G000200.1	Wheat	plastid	59.91	57.24
CDX84561	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	67.03	57.2
TraesCS2B01G606700.2	Wheat	plastid	59.91	57.05
KXG36359	Sorghum	plastid	59.12	56.49
Zm00001d021647_P003	Maize	plastid	58.62	56.43
TraesCS7B01G088800.1	Wheat	plastid	58.76	56.37
Zm00001d025012_P003	Maize	plastid	59.05	55.96
Zm00001d009037_P003	Maize	plastid	58.76	55.84
HORVU5Hr1G106850.1	Barley	cytosol	59.91	55.75
TraesCS2D01G051800.1	Wheat	plasma membrane	56.03	55.71
Zm00001d034940_P003	Maize	plastid	58.62	54.77
PGSC0003DMT400006729	Potato	plastid	58.62	54.4
PGSC0003DMT400067210	Potato	plasma membrane	53.66	53.09
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	5.75	52.63
PGSC0003DMT400005783	Potato	cytosol, peroxisome, plasma membrane	58.76	51.77
Os11t0587600-01	Rice	plasma membrane	24.57	51.43
PGSC0003DMT400046986	Potato	plasma membrane	32.47	50.79
Bra017241.1-P	Field mustard	cytosol, mitochondrion, nucleus, plasma membrane	69.4	42.56
Os07t0522600-02	Rice	plasma membrane	0.14	0.31

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans	InterPro:ABC_transporter-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1BPV3
InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061	PFAM:PF08370	EnsemblPlantsGene:PGSC0003DMG400019478
PGSC:PGSC0003DMG400019478	EnsemblPlants:PGSC0003DMT400050166	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF261	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000295060B	SEG:seg	:	:

Description

ATP-binding cassette transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400019478]

Coordinates

chr11:-:5013377..5020180

Molecular Weight (calculated)

158636.0 Da

IEP (calculated)

7.692

GRAVY (calculated)

0.004

Length

1392 amino acids

Sequence
(BLAST)

0001: MASSMRENEL VRSMSKKASF SSASRRGSWA SASLREAFGA PGGDVFVKSG RQDDEDELKW AAIERLPTYD RMRKGILKQV LDNGRVVHEQ VDVAHMGMHE
0101: KKQLMESILN GIDEDNERFL LRLKDRIERM TLLLGPPASG KTTLLKALAG KLEQDLRVKG KVTHCGHELK EFIPQRTCAY ICQHDLHHGE MTVRETLDFS
0201: GRCFGVGARY ELLAELSRRE KDSGIKPDPE VDAFMKAISV AGQKTNLVTD SILKILGLDI CSDTMVGDEM RRGISGGQKK RVTTGEMLVG PAKVFLMDEI
0301: STGLDSSTTF QIVKYMRQMV HIMNVTMIIS LLQPAPETFD LFDEIILLSE GQVVYQGPRE NVLEFFESVG FKCPERKGVA DFLQEVTSKK DQEQYWSKKN
0401: VPYQFVSVLD FVENFKSFHI GLKLFGEVQV PYDRSRTHPA ALVKEKYGIS NKELFKACLS REWLLMKRNS FVYIFKTVQI TIMAIFTFTV FFRTKMKHGE
0501: AEDGGKFYGA LFFSLLNVMF NGMAELAMTI FRLPVFFKQR DALFYPAWAF ALPIWLLRIP ISLMESGIWI LLTYYTVGFA PAADRFFRQY LAYVGIHQMA
0601: LGLFRFIAAL GRTQVVANTL GTFTLLSVFV LGGFIIAKDD LQPWMKWAYY LSPMSYGQNA IVLVEFLDKR WNKPNEDPSF QGKTVGIELL KDRGMFTEDI
0701: WYWICVIALF AFSLFFNLCF VAALTYLKPL GDTKSIMVNE EDSQNKEKKM KVTPHEGKNT SEDINSNCAV SATNKKGMVL PFQPLSLSFE HVNYYVDMPA
0801: EMRSQGIEET RLQLLREVSG AFRPGVLTAL MGVSGAGKTT LMDVLAGRKT GGYIEGNICV SGYPKFQETF ARVSGYCEQN DIHSPHVTIY ESLLYSAWLR
0901: LPSDVNNETR MMFVEEVMEL VELTLLRNSL VGLPGVDGLS TEQRKRLTIA VELVANPSII FMDEPTSGLD ARAAAIVMRA VRNTVDTGRT VVCTIHQPSI
1001: DIFESFDELF LMKRGGQVIY AGPLGRNSQH LTEYFESVPG VNKIKDGYNP ATWMLEVSAA SVETQFGVNF AEYYTNSDLY RRNEELNKEL STPAPGSKDL
1101: YFPTKYSQPL LTQFKACFWK QHWSYWRNPQ YNVIRFFMTT VIGIIFGVIF WDKGGKLEKQ QDLSNLMGAM YAAVLFLGGT NTSAVQSVVA IERTVFYRER
1201: AAGMFSALPY AFAQVTVETI YVGIQTFLYS LILYSMIGFE WQADKFFWFY YYVFMCFVYF TLYGMMLVAL TPNYQIAAIV MSFFLSFWNL FSGFLIPRMQ
1301: IPIWWRWYYW GSPVAWTIYG LITSQLGDKT ELVHIPSHDG TPTYIQLKDY LKQYLGYDYD FLGAVAAAHL AWVLLFFFVF VYAIRVLNFQ KR

Best Arabidopsis Sequence Match ( AT1G66950.1 )
(BLAST)

0001: MAAMLGRDED PVGALSGRVS LASTSHRSLV GASKSFRDVF MPQTDEVFGR SERREEDDME LRWAAIERLP TFDRLRKGML PQTSANGKIE LEDIDLTRLE
0101: PKDKKHLMEM ILSFVEEDNE KFLRDLRERT DRVGIEVPKI EVRYENISVE GDVRSASRAL PTLFNVTLNT LESILGFFHL LPSKRKKIQI LKDISGIVKP
0201: SRMTLLLGPP SSGKTTLLQA LAGKLDDTLQ MSGRITYCGH EFREFVPQKT CAYISQHDLH FGEMTVREIL DFSGRCLGVG SRYQLMSELS RREKEEGIKP
0301: DPKIDAFMKS IAISGQETSL VTDYVLKILG LDICADILAG DVMRRGISGG QKKRLTTGEM LVGPARALFM DEISTGLDSS TTFQICKFMR QLVHISDVTM
0401: IISLLQPAPE TFELFDDIIL LSEGQIVYQG PRDNVLEFFE YFGFQCPERK GVADFLQEVT SKKDQEQYWN KREQPYNYVS VSDFSSGFST FHTGQKLTSE
0501: FRVPYDKAKT HSAALVTQKY GISNWELFKA CFDREWLLMK RNSFVYVFKT VQITIMSLIT MTVYLRTEMH VGTVRDGQKF YGAMFFSLIN VMFNGLAELA
0601: FTVMRLPVFY KQRDFLFYPP WAFALPAWLL KIPLSLIESG IWIGLTYYTI GFAPSAARFF RQLLAYFCVN QMALSLFRFL GAIGRTEVIS NSIGTFTLLI
0701: VFTLGGFIIA KDDIRPWMTW AYYMSPMMYG QTAIVMNEFL DERWSSPNYD TRINAKTVGE VLLKSRGFFT EPYWFWICIV ALLGFSLLFN LFYILALMYL
0801: NPLGNSKATV VEEGKDKQKG ENRGTEGSVV ELNSSSNKGP KRGMVLPFQP LSLAFNNVNY YVDMPSEMKA QGVEGDRLQL LRDVGGAFRP GILTALVGVS
0901: GAGKTTLMDV LAGRKTGGYI EGSISISGYP KNQTTFARVS GYCEQNDIHS PHVTVYESLI YSAWLRLSTD IDIKTRELFV EEVMELVELK PLRNSIVGLP
1001: GVDGLSTEQR KRLTIAVELV ANPSIIFMDE PTSGLDARAA AIVMRTVRNT VDTGRTVVCT IHQPSIDIFE SFDELLLMKR GGQVIYAGSL GHHSQKLVEY
1101: FEAVEGVPKI NDGYNPATWM LDVTTPSMES QMSLDFAQIF SNSSLYRRNQ ELIKDLSTPP PGSKDVYFKT KYAQSFSTQT KACFWKQYWS YWRHPQYNAI
1201: RFLMTVVIGV LFGLIFWQIG TKTENEQDLN NFFGAMYAAV LFLGALNAAT VQPAIAIERT VFYREKAAGM YSAIPYAISQ VAVEIMYNTI QTGVYTLILY
1301: SMIGCNWTMA KFLWFYYYML TSFIYFTLYG MMLMALTPNY QIAGICMSFF LSLWNLFSGF LIPRPQIPIW WRWYYWATPV AWTLYGLITS QVGDKDSMVH
1401: ISGIGDIDLK TLLKEGFGFE HDFLPVVAVV HIAWILLFLF VFAYGIKFLN FQRR

Arabidopsis Description

ABCG39ABC transporter G family member 39 [Source:UniProtKB/Swiss-Prot;Acc:Q7PC84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.