Factsheet for PGSC0003DMT400061280

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100180.1.1	Tomato	mitochondrion, nucleus, plasma membrane, plastid	94.98	94.98
PGSC0003DMT400076208	Potato	plastid	82.02	81.74
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	70.8	81.61
PGSC0003DMT400076209	Potato	plasma membrane	78.95	79.06
VIT_09s0002g05370.t01	Wine grape	mitochondrion, plasma membrane	74.56	75.3
PGSC0003DMT400005785	Potato	cytosol, peroxisome, plasma membrane	32.68	75.04
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	59.09	74.32
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	7.8	73.68
VIT_09s0002g05560.t01	Wine grape	plasma membrane	73.8	72.83
KRH09797	Soybean	endoplasmic reticulum	72.33	72.74
KRH23522	Soybean	mitochondrion	71.99	72.44
GSMUA_Achr6P34530_001	Banana	plasma membrane	65.57	71.34
KRH47506	Soybean	endoplasmic reticulum	70.73	71.18
Os01t0609300-01	Rice	plasma membrane	63.97	71.0
Bra026124.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	69.9	70.98
CDY36570	Canola	cytosol, nucleus, plasma membrane, plastid	69.9	70.98
GSMUA_Achr9P02950_001	Banana	plasma membrane	68.57	70.84
CDY39660	Canola	cytosol, nucleus, plasma membrane	69.83	70.81
AT1G15520.1	Thale cress	plastid	69.62	70.2
Os08t0384500-01	Rice	plasma membrane	36.93	69.46
KRH67471	Soybean	endoplasmic reticulum	69.76	69.27
KRG95762	Soybean	mitochondrion	68.85	69.09
EES03260	Sorghum	plasma membrane	61.12	68.52
Zm00001d011315_P002	Maize	plasma membrane	68.78	68.35
Os01t0609900-02	Rice	plasma membrane	65.99	68.23
TraesCS3D01G234400.1	Wheat	plasma membrane	68.78	67.88
TraesCS7B01G292700.1	Wheat	plasma membrane	67.6	67.83
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	68.71	67.81
KXG32865	Sorghum	plasma membrane	68.78	67.7
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	68.43	67.68
Os01t0342750-01	Rice	plasma membrane	33.03	67.62
TraesCS3A01G217900.1	Wheat	cytosol	68.43	67.54
TraesCS7D01G386600.1	Wheat	plasma membrane	67.94	67.47
HORVU3Hr1G053350.8	Barley	vacuole	68.5	67.47
HORVU7Hr1G092510.2	Barley	plasma membrane	67.74	67.45
TraesCS7A01G391100.1	Wheat	plasma membrane	67.8	67.43
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.87	67.22
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.87	67.22
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.8	67.15
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.32	66.67
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	67.94	66.64
HORVU7Hr1G092380.8	Barley	cytosol	66.9	66.34
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	66.55	66.32
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	66.9	66.3
TraesCS7A01G391000.1	Wheat	plasma membrane	67.04	66.25
TraesCS7D01G386500.1	Wheat	plasma membrane	66.97	66.18
GSMUA_Achr9P01490_001	Banana	plasma membrane	68.85	66.18
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	67.39	66.1
TraesCSU01G097600.2	Wheat	plasma membrane	66.83	66.05
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	66.27	66.04
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	67.87	66.03
PGSC0003DMT400048449	Potato	cytosol, peroxisome, plasma membrane	55.96	65.98
KRH47220	Soybean	plasma membrane	43.69	65.93
KRH09795	Soybean	endoplasmic reticulum	69.41	65.87
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	66.06	65.83
Os01t0609200-00	Rice	plasma membrane	66.76	65.44
EER98908	Sorghum	cytosol, nucleus, plasma membrane	66.41	65.23
KXG32860	Sorghum	plasma membrane	66.41	65.14
Os01t0609000-00	Rice	plasma membrane	66.2	64.71
TraesCS3B01G523700.1	Wheat	mitochondrion	48.22	64.67
PGSC0003DMT400005783	Potato	cytosol, peroxisome, plasma membrane	71.01	64.49
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	65.99	64.16
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	64.25	63.81
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	63.9	63.77
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	64.25	63.67
EER98758	Sorghum	cytosol, nucleus, plasma membrane	64.25	63.63
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	64.25	63.59
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	63.97	63.53
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	63.9	63.42
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	63.97	63.4
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	54.77	63.28
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	61.05	62.75
Zm00001d044442_P036	Maize	plasma membrane	68.71	62.64
KXG20401	Sorghum	plasma membrane	62.93	62.28
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	61.46	61.64
Os09t0333000-00	Rice	plasma membrane	34.7	61.33
PGSC0003DMT400068277	Potato	cytosol	56.1	60.25
KRG95752	Soybean	cytosol, peroxisome, plasma membrane	67.18	59.84
PGSC0003DMT400050166	Potato	plastid	57.91	59.7
PGSC0003DMT400060396	Potato	plastid	61.32	59.54
PGSC0003DMT400050158	Potato	cytosol, peroxisome, plasma membrane	59.72	59.27
Os09t0332300-00	Rice	plasma membrane	33.1	57.51
TraesCS6D01G094800.1	Wheat	plasma membrane	37.0	57.34
PGSC0003DMT400067210	Potato	plasma membrane	56.17	57.28
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	50.17	57.23
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	31.36	57.18
PGSC0003DMT400006729	Potato	plastid	58.95	56.4
PGSC0003DMT400060117	Potato	cytosol	39.79	56.26
Os01t0516900-00	Rice	plasma membrane	25.92	52.99
PGSC0003DMT400046986	Potato	plasma membrane	31.5	50.79

Protein Annotations

EntrezGene:102601253	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:M1C7B0	InterPro:P-loop_NTPase	InterPro:PDR_assoc
PFAM:PF00005	PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	EnsemblPlantsGene:PGSC0003DMG400023849	PGSC:PGSC0003DMG400023849
EnsemblPlants:PGSC0003DMT400061280	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF444	SMART:SM00382	SUPFAM:SSF52540
TMHMM:TMhelix	UniParc:UPI0002948BC1	RefSeq:XP_006365806.1	SEG:seg	:	:

Description

Pleiotropic drug resistance protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400023849]

Coordinates

chr12:+:60789800..60796666

Molecular Weight (calculated)

162643.0 Da

IEP (calculated)

8.566

GRAVY (calculated)

0.009

Length

1435 amino acids

Sequence
(BLAST)

0001: MEPTNSRGTS LREKIIRGSS LRGSLSSKRN STNNSRWSGN DGEIFNRSTR DEDDEEALKW AALEKLPTFD RLRKGLLLGS QGASAEIDIH DIGFQERNKL
0101: LERLVKVADE DNEKLLLKLR QRIDRVGIDL PEIEVRYEHL TIEADAYIGS RALPTFINFI TNFLEDILNP LHILPSRKRK LTILNDVSGI IKPRRLTLLL
0201: GPPSSGKTTL LLALAGKLDS ALKVTGKVTY NGHEMNEFVP QRTAAYISQY DLHIGEMTVR ETLEFSARCQ GVGSSYEMLV ELTRREKEAK IKPDPDIDIF
0301: MKALAAEGQE ANFVTEYVLK LLGLDICADT MVGDEMIRGI SGGQKKRVTT GEMLVGPSKA LFMDEISTGL DSSTTYSIVN SLRQSVQILH GTAVISLLQP
0401: APETYNLFDD IILLSDGKIV YQGPREDVLG FFESMGFKCP DRKGVADFLQ EVTSKKDQQQ YWVRRDETYR FITSKEFAEA YQSFHVGRKL VDDLAASYDK
0501: SKSHPAALST QKYGIGKKQL LKVCTEREFL LMKRNSFVYI FKFIQLTIMA LISMTLFFRT KMPRDTIEDG VKYVGALFFV VTMIMFNGMA EIALTIYKLP
0601: VFYKQRDLLF YPSWAYAMPT WILKIPITFV EVGLWVFLTY YVIGFDPSPA RFFKHFLLLI LVNQMASGLF RFIGATGRTM GVANTFGTFV LLLQFALGGF
0701: VLSRDDVKKW WLWGYWSSPM MYSMNSILVN EFGGKRWKQI APIGTDSLGV TVVRSRGFFT NAYWYWIGVG ALIGFTIVFN ICYSLALAYL NPFGKPQGMI
0801: SEDSDDAKTT STEKEVSTSE GQNKKKGMVL PFEPHSITFD EVTYSVDMPQ EMKNQGVTED RLVLLNGVCG AFRPGVLTAL MGVSGAGKTT LLDVLAGRKT
0901: GGYIEGSIKI SGYPKKQETF ARISGYCEQN DIHSPYVTVY ESLVYSAWLR LPSDVDEKTR KMFVDEVMEL VELTPLRSAL VGLPGVNGLS TEQRKRLTIA
1001: VELVANPSII FMDEPTSGLD ARAAAIVMRT VRNTVDTGRT VVCTIHQPSI DIFEAFDELF LMKRGGKEIY VGPLGHHSCH LIRYFESIPG VSKIQDGYNP
1101: ATWMLEVTNS AQEMMLGVDF TDLYKKSDLY RRNKILIREL SVPGPGTKDL HFNNQYSQPF WTQCMACLWK QHWSYWRNPA YTAVRYIFTI IIALAIGTMF
1201: WDLGTKVSKS QDLFNAMGSM YAPVLFLGFQ NASSVMPVVA VERTVFYRER AAGMYSSLPY AFGQAFIEIP YVFVQAVTYG VIIYAMIGFE WTVTKFFWYL
1301: FIMYFTLLYF TFYGLMSVAV SPNQNIAQIV SLFGYAMWNL FSGFMIPRPS MPIWWRWYYW ACPVSWTLYG LVASQFGDLQ DKLTDSDETA KHFLRRYFGF
1401: KHDFLGVVAF VTVAYAVVFA FTFALAIKVF NFQKR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.