CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67471	Soybean	endoplasmic reticulum	79.72	78.89
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	56.43	70.73
VIT_09s0002g05370.t01	Wine grape	mitochondrion, plasma membrane	70.28	70.72
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	60.42	69.4
Solyc05g053590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane	68.32	69.19
Solyc12g100180.1.1	Tomato	mitochondrion, nucleus, plasma membrane, plastid	69.09	68.85
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	69.09	68.85
PGSC0003DMT400076208	Potato	plastid	69.3	68.82
KRH09797	Soybean	endoplasmic reticulum	68.6	68.75
Solyc09g091660.2.1	Tomato	plastid	69.09	68.61
VIT_09s0002g05560.t01	Wine grape	plasma membrane	69.72	68.57
KRH23522	Soybean	mitochondrion	68.18	68.37
KRH47506	Soybean	endoplasmic reticulum	68.18	68.37
Os01t0609300-01	Rice	plasma membrane	61.75	68.29
Solyc12g098210.1.1	Tomato	plastid	67.9	68.14
PGSC0003DMT400076209	Potato	plasma membrane	67.83	67.69
GSMUA_Achr9P02950_001	Banana	plasma membrane	65.66	67.6
KRG95752	Soybean	cytosol, peroxisome, plasma membrane	76.01	67.47
Os08t0384500-01	Rice	plasma membrane	35.94	67.37
KRH61824	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	68.04	67.15
KRH52503	Soybean	cytosol, peroxisome, plasma membrane	67.97	67.13
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	7.13	67.11
CDY39660	Canola	cytosol, nucleus, plasma membrane	66.01	66.71
CDY36570	Canola	cytosol, nucleus, plasma membrane, plastid	65.87	66.67
Bra026124.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	65.87	66.67
Os01t0609900-02	Rice	plasma membrane	64.69	66.64
GSMUA_Achr6P34530_001	Banana	plasma membrane	61.33	66.49
EES03260	Sorghum	plasma membrane	58.88	65.78
AT1G15520.1	Thale cress	plastid	65.45	65.78
TraesCS3D01G234400.1	Wheat	plasma membrane	66.85	65.75
Zm00001d011315_P002	Maize	plasma membrane	66.36	65.72
TraesCS7B01G292700.1	Wheat	plasma membrane	65.66	65.66
TraesCS3A01G217900.1	Wheat	cytosol	66.71	65.61
Os01t0342750-01	Rice	plasma membrane	32.1	65.48
HORVU3Hr1G053350.8	Barley	vacuole	66.71	65.48
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	66.57	65.47
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	66.36	65.4
TraesCS7D01G386600.1	Wheat	plasma membrane	65.87	65.19
TraesCS7A01G391100.1	Wheat	plasma membrane	65.73	65.14
HORVU7Hr1G092510.2	Barley	plasma membrane	65.45	64.95
KXG32865	Sorghum	plasma membrane	66.15	64.88
KRH47220	Soybean	plasma membrane	43.08	64.77
KRH09795	Soybean	endoplasmic reticulum	68.46	64.75
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	65.03	64.58
Os01t0609200-00	Rice	plasma membrane	66.08	64.55
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.31	64.46
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.17	64.32
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.17	64.32
HORVU7Hr1G092380.8	Barley	cytosol	64.9	64.13
TraesCS7D01G386500.1	Wheat	plasma membrane	65.1	64.12
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	64.41	63.96
TraesCS7A01G391000.1	Wheat	plasma membrane	64.9	63.91
TraesCSU01G097600.2	Wheat	plasma membrane	64.9	63.91
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	65.38	63.91
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	64.34	63.89
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	64.69	63.84
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	64.55	63.74
GSMUA_Achr9P01490_001	Banana	plasma membrane	66.5	63.7
KRH16029	Soybean	cytosol	64.41	63.65
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	65.1	63.64
Os01t0609000-00	Rice	plasma membrane	65.31	63.62
KRH67874	Soybean	mitochondrion	27.76	63.52
KRH05088	Soybean	endoplasmic reticulum	64.06	63.3
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	65.17	63.19
TraesCS3B01G523700.1	Wheat	mitochondrion	47.27	63.18
EER98908	Sorghum	cytosol, nucleus, plasma membrane	64.55	63.18
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	63.64	62.85
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	63.71	62.83
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	63.5	62.71
KXG32860	Sorghum	plasma membrane	63.99	62.54
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	54.2	62.4
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	62.73	62.38
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	63.01	62.35
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	64.34	62.33
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	62.8	62.15
EER98758	Sorghum	cytosol, nucleus, plasma membrane	62.94	62.11
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	62.8	62.1
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	60.56	62.03
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	61.68	61.64
KXG20401	Sorghum	plasma membrane	62.03	61.17
Zm00001d044442_P036	Maize	plasma membrane	66.22	60.17
Os09t0333000-00	Rice	plasma membrane	33.85	59.61
KRH34743	Soybean	plasma membrane	49.02	58.03
KRH71633	Soybean	nucleus	59.58	57.57
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	31.61	57.43
KRH67876	Soybean	plasma membrane	30.77	57.22
Os09t0332300-00	Rice	plasma membrane	33.01	57.14
TraesCS6D01G094800.1	Wheat	plasma membrane	36.29	56.05
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	49.3	56.04
KRG92040	Soybean	extracellular	57.34	55.63
KRH23404	Soybean	plasma membrane	56.15	54.0
Os01t0516900-00	Rice	plasma membrane	25.24	51.42
KRH02448	Soybean	plasma membrane	51.82	51.03
KRH17029	Soybean	cytosol, nucleus, plasma membrane	50.91	50.56

Protein Annotations

EntrezGene:100813417	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:ACUP02012133	EnsemblPlantsGene:GLYMA_19G169400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1N9W1	InterPro:IPR003439
EnsemblPlants:KRG95762	ProteinID:KRG95762	ProteinID:KRG95762.1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF456
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000233F44B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:43013312..43021269

Molecular Weight (calculated)

161532.0 Da

IEP (calculated)

9.172

GRAVY (calculated)

0.051

Length

1430 amino acids

Sequence
(BLAST)

0001: MEDGGSVKAG STTNTMSSFR IGSRSVWSNS GVEIFANSFH QEDDEEALKW AAIQKLPTFA RLRTGLMTSP EGVANEVNVH QLGLQERRGL LERLVRVAEE
0101: DNEKFMLKLR DRIDRVGITI PTIEVRFENM NIGAEVHVGS RALPTFTNYM VNKVEGLLNF LHVLPSRKQR INILQNVSGI IRPARMTLLL GPPSSGKTTL
0201: LLALAGRLDS KLKFTGKVTY NGHGMNEFVP QRTAAYVSQN DLHIGEMTVR ETLAFSARVQ GVGARYDLLA EVSRREKEAN IKPDPDIDVY MKAVATEGQK
0301: ANFITDYILR ILGLEVCADT IVGNAMLRGI SGGQRKRVTT GEMLVGPAKA VFMDEISTGL DSSTTFQVVN SLKHFIHSLK GTAVVSLLQP APETYNLFDD
0401: IILLSDGQIV YQGPREHVLE FFASVGFKCP ERKGVADFLQ EVTSRKDQEQ YWVHRDQPYR FVTTEEFVEA FQSFHVGRSL ADELATQFDK SKSHPAALAT
0501: KMYGLGKWEL LKACLSREYL LMKRNSFVHI FQLCQLAIVA FIAMTVFFRT EMHPDSVTSG GIYAGALFYG LLVILLDGFA DLTMTVSKLP VFYKQRDFLF
0601: FPSWVYALPA WILKIPMTFA QVGIWVFLTY YVIGFDPYVG RFFRQFLLLL FVNQMASALF RFIGALGREL TVAFTIGSFV LAILIAMSGF ILSKGNMKKW
0701: WLWGFWSSPM MYGLNAMINN EFQGKRWRHV LPNSTTPLGV QVLKSRGFFT QSKWYWIGVG ALIGYTIVFN IAYILALTYL NPIVQHQAVK SEKSQSNEQD
0801: GGSTSARSSS RRKEADRRRG MALPFEPHSI TFDDVTYSVD MPQEMKNQGV LEDRLNLLKG VSGTFRPGVL TALMGSTGAG KTTLMDVLAG RKTGGYIGGN
0901: ITISGYPKKQ ETFARISGYC EQNDIHSPYV TVYESLLYSA WLRLSAEINS ETRKMFIEEV IELVELNPLK HTIVGLPGVN GLSTEQRKRL TISVELVANP
1001: SIIFMDEPTS GLDARAAAVV MRAIRKIVDT GRTVVCTIHQ PSIDIFESFD ELFLMKRGGQ EIYVGPLGHH SYHLISYFEG IKGVRTIEDG YNPATWMLEV
1101: TTSAKEMELG IDFAELYKNS DLYRRNKELI EELSTPAPGS KDLYFSSKYS RSFITQCMAC LWKQHWSYWR NNEYTALRFL FTIAVALLFG SIYWNLGSKI
1201: KKQQDLFNAM GSMYAAVLLL GIKNSNSAQP LVAVERTVFY REKAAGMYSA LAYAFAQVVV ELPHVLLQTV VYSAIVYAMI GFEWSVTKFF WYLFFMYFTF
1301: LYFTYYGMMS AAMTPNPSLA VIISSGFYEV WNLFSGFIIP RPRMPVWWRW YYWANPVAWT LYGLVTSQFG DIQDHIEFNG RSTTVEDFLR NYFGFKHDFL
1401: GVVAAVLIGF AVTFALIFAI AIKMLNFQRR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.