CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23522	Soybean	mitochondrion	90.96	91.02
KRH47506	Soybean	endoplasmic reticulum	80.52	80.58
VIT_09s0002g05370.t01	Wine grape	mitochondrion, plasma membrane	76.87	77.2
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	60.2	75.28
VIT_09s0002g05560.t01	Wine grape	plasma membrane	75.4	74.0
PGSC0003DMT400076208	Potato	plastid	74.56	73.89
Solyc09g091660.2.1	Tomato	plastid	74.49	73.82
PGSC0003DMT400034130	Potato	cytosol, mitochondrion, peroxisome, plasma membrane, plastid	64.12	73.49
Solyc05g053590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane	72.32	73.09
PGSC0003DMT400076209	Potato	plasma membrane	73.3	72.99
Solyc12g098210.1.1	Tomato	plastid	72.74	72.84
GSMUA_Achr9P02950_001	Banana	plasma membrane	70.57	72.5
PGSC0003DMT400061280	Potato	cytosol, nucleus, plasma membrane, plastid	72.74	72.33
Solyc12g100180.1.1	Tomato	mitochondrion, nucleus, plasma membrane, plastid	71.83	71.43
GSMUA_Achr6P34530_001	Banana	plasma membrane	65.87	71.27
KRH47220	Soybean	plasma membrane	47.44	71.19
Os01t0609300-01	Rice	plasma membrane	64.4	71.08
KRH09795	Soybean	endoplasmic reticulum	75.26	71.03
Os08t0384500-01	Rice	plasma membrane	37.49	70.12
KRH67471	Soybean	endoplasmic reticulum	70.71	69.83
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	70.85	69.68
EES03260	Sorghum	plasma membrane	62.37	69.53
Zm00001d011315_P002	Maize	plasma membrane	70.36	69.53
KRH52503	Soybean	cytosol, peroxisome, plasma membrane	70.5	69.48
KRH61824	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	70.22	69.15
KXG32865	Sorghum	plasma membrane	70.57	69.07
Os01t0609900-02	Rice	plasma membrane	66.99	68.88
KRG95762	Soybean	mitochondrion	68.75	68.6
TraesCS3D01G234400.1	Wheat	plasma membrane	69.66	68.36
TraesCS7B01G292700.1	Wheat	plasma membrane	68.47	68.32
TraesCS3A01G217900.1	Wheat	cytosol	69.52	68.23
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	69.45	68.16
HORVU7Hr1G092510.2	Barley	plasma membrane	68.82	68.15
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	69.1	68.05
HORVU3Hr1G053350.8	Barley	vacuole	69.45	68.02
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	68.96	67.91
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	68.96	67.91
KRH16029	Soybean	cytosol	68.82	67.86
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	68.89	67.84
TraesCS7D01G386600.1	Wheat	plasma membrane	68.68	67.82
HORVU7Hr1G092380.8	Barley	cytosol	68.75	67.8
TraesCS7A01G391100.1	Wheat	plasma membrane	68.54	67.78
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	68.4	67.4
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	69.1	67.4
TraesCSU01G097600.2	Wheat	plasma membrane	68.47	67.29
TraesCS7D01G386500.1	Wheat	plasma membrane	68.47	67.29
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	68.96	67.26
TraesCS7A01G391000.1	Wheat	plasma membrane	68.4	67.22
Os01t0609200-00	Rice	plasma membrane	68.82	67.08
KRH05088	Soybean	endoplasmic reticulum	67.83	66.9
GSMUA_Achr9P01490_001	Banana	plasma membrane	69.87	66.78
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	68.89	66.64
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	67.06	66.46
Os01t0342750-01	Rice	plasma membrane	32.59	66.33
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	66.92	66.32
TraesCS3B01G523700.1	Wheat	mitochondrion	49.68	66.26
KXG32860	Sorghum	plasma membrane	67.9	66.23
Os01t0609000-00	Rice	plasma membrane	68.04	66.14
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	66.64	66.04
EER98908	Sorghum	cytosol, nucleus, plasma membrane	67.55	65.98
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	66.01	65.51
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	66.43	65.47
KRH67874	Soybean	mitochondrion	28.59	65.28
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	66.08	65.26
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	66.22	65.17
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	6.94	65.13
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	66.08	65.12
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	65.87	65.05
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	65.66	64.8
EER98758	Sorghum	cytosol, nucleus, plasma membrane	65.73	64.73
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	63.21	64.61
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	66.57	64.36
Zm00001d044442_P036	Maize	plasma membrane	70.71	64.1
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	55.78	64.09
KXG20401	Sorghum	plasma membrane	63.56	62.55
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	62.72	62.54
Os09t0333000-00	Rice	plasma membrane	35.53	62.44
Os09t0332300-00	Rice	plasma membrane	35.04	60.53
KRG95752	Soybean	cytosol, peroxisome, plasma membrane	68.11	60.34
KRH71633	Soybean	nucleus	61.81	59.59
KRH34743	Soybean	plasma membrane	50.39	59.52
KRH67876	Soybean	plasma membrane	31.25	58.0
KRH23404	Soybean	plasma membrane	60.13	57.7
KRG92040	Soybean	extracellular	59.29	57.39
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	31.53	57.18
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	50.03	56.76
TraesCS6D01G094800.1	Wheat	plasma membrane	36.37	56.05
Os01t0516900-00	Rice	plasma membrane	26.7	54.27
KRH17029	Soybean	cytosol, nucleus, plasma membrane	54.03	53.54
KRH02448	Soybean	plasma membrane	53.54	52.62

Protein Annotations

EntrezGene:100793825	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:ACUP02009109	EnsemblPlantsGene:GLYMA_15G012000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1MCJ9	InterPro:IPR003439
EnsemblPlants:KRH09797	ProteinID:KRH09797	ProteinID:KRH09797.1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF444
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000233B8A3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:936268..944374

Molecular Weight (calculated)

160795.0 Da

IEP (calculated)

6.966

GRAVY (calculated)

0.049

Length

1427 amino acids

Sequence
(BLAST)

0001: MEGSDIYRAS NSLRSRSSTV WRNSGVEAFS RSSREEDDEE ALKWAALEKL PTYNRLRKGL LTASHGVANE IDVSDLGIQE RQKLLERLVK VAEEDNERFL
0101: LKLKERIDRV GLDIPTIEVR YEHLNIEAEA FVGSRALPSF INSVTNVVEG FFNLLHVSTS KKKHVTILKD VSGIIKPRRM TLLLGPPSSG KTTLLLALSG
0201: KLDKTLKVSG RVTYNGHELN EFVPQRTAAY ISQHDLHIGE MTVRETLAFS ARCQGVGSRY DMLSELSRRE KAANIKPDPD LDVYMKATAT EGQESNIVTD
0301: YTLKILGLDI CADTMVGDEM LRGISGGQRK RVTTGEMLVG PANALFMDEI STGLDSSTTF QIVSSLRHYV HILNGTAVIS LLQPAPETYD LFDDIILISD
0401: GQVVYHGPRE YVLDFFESMG FRCPERKGVA DFLQEVTSKK DQAQYWVRRD QPYRFVTVTQ FAEAFQSFHI GGKLGEELTV PFDRTKSHPA ALTTKKYGIN
0501: KKELLKANFS REYLLMKRNS FVYLFKLSQL FIMALVAMTL FLRTEMHHEN MDDAGVYAGA VFFMLITVMF NGLAEISMTI AKLPVFYKQR NLLFYPSWAY
0601: AIPSWILKIP VTIVEVAVWV FLTYYVIGFD PNVGRFFKQY LVLLIVSQMA SGLFRTIAAL GRNMIVANTF GAFAIITVVA LGGFILSKRD IKSWWIWGYW
0701: ISPLMYGQNA LMVNEFLSNS WHNATHNLGV EYLESRAFFT DSYWYWLGLG ALVGFVFLFN VMFGLALEFL GPFDKPQATI TEDESSNEGT LADIELPGIE
0801: SSGRGDSLVE SSHGKKKGMV LPFEPHSITF DEVVYSVDMP QEMKEQGVQE DRLVLLKGVS GAFRPGVLTA LMGVSGAGKT TLMDVLAGRK TGGYIDGSIK
0901: ISGYPKKQET FARISGYCEQ NDIHSPHVTV YESLLYSAWL RLPSSVDSKT RKMFIEEVME LVELNPVRNS LVGLPGVSGL STEQRKRLTI AVELVANPSI
1001: IFMDEPTSGL DARAAAIVMR TVRNTVDTGR TVVCTIHQPS IDIFEAFDEL FLMKRGGQEI YVGPLGRHSS HLIKYFESIE GVSKIKDGYN PATWMLEVTA
1101: TAQELSLGVD FTDLYKNSDL YRRNKQLIQE LGQPAPGSKD LHFPTQYSQS FLVQCQACLW KQRWSYWRNP PYTAVRFFFT TFIALMFGTI FWDLGGKHST
1201: RGDLLNAIGS MYTAVLFLGV QNASSVQPVV AIERTVFYRE KAAGMYSALP YAFAQILVEL PYVFVQAVTY GVIVYAMIGF EWTAEKFFWY LFFMYFTLLY
1301: YTFYGMMTVG LTPNHHIASI VAAAFYAVWN LFSGFVVTRP SIPVWWRWYY WACPVAWTIY GLVASQFGDL TEPMTSEGQK IVKDFLEDYY GIKHDFIGVS
1401: AVVVAGIAVL FALIFAVSIK TFNFQKR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.