Factsheet for Solyc12g098210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043433	Potato	endoplasmic reticulum, plasma membrane	10.67	100.0
Solyc09g091660.2.1	Tomato	plastid	82.81	81.94
Solyc12g100180.1.1	Tomato	mitochondrion, nucleus, plasma membrane, plastid	80.84	80.28
Solyc05g053590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane	79.44	80.17
VIT_09s0002g05370.t01	Wine grape	mitochondrion, plasma membrane	74.46	74.67
GSMUA_Achr1P14530_001	Banana	mitochondrion, plasma membrane	58.95	73.62
KRH09797	Soybean	endoplasmic reticulum	72.84	72.74
VIT_09s0002g05560.t01	Wine grape	plasma membrane	74.18	72.7
KRH23522	Soybean	mitochondrion	72.42	72.37
Solyc12g019640.1.1	Tomato	plasma membrane	30.81	72.2
KRH47506	Soybean	endoplasmic reticulum	71.65	71.6
GSMUA_Achr9P02950_001	Banana	plasma membrane	69.4	71.2
GSMUA_Achr6P34530_001	Banana	plasma membrane	65.82	71.11
Os01t0609300-01	Rice	plasma membrane	63.93	70.46
Bra026124.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	69.61	70.21
CDY36570	Canola	cytosol, nucleus, plasma membrane, plastid	69.61	70.21
CDY39660	Canola	cytosol, nucleus, plasma membrane	69.47	69.96
Solyc08g067620.2.1	Tomato	nucleus	71.23	69.86
AT1G15520.1	Thale cress	plastid	69.26	69.36
Zm00001d011315_P002	Maize	plasma membrane	69.47	68.56
KRH67471	Soybean	endoplasmic reticulum	69.4	68.44
EES03260	Sorghum	plasma membrane	61.4	68.36
Os01t0609900-02	Rice	plasma membrane	66.39	68.16
KRG95762	Soybean	mitochondrion	68.14	67.9
Os08t0384500-01	Rice	plasma membrane	36.35	67.89
KXG32863	Sorghum	cytosol, peroxisome, plasma membrane	69.12	67.88
KXG32865	Sorghum	plasma membrane	69.4	67.83
Os01t0342750-01	Rice	plasma membrane	33.12	67.33
TraesCS3D01G234400.1	Wheat	plasma membrane	68.7	67.33
TraesCS3B01G248400.1	Wheat	cytosol, peroxisome, plasma membrane	68.63	67.26
TraesCS3A01G217900.1	Wheat	cytosol	68.63	67.26
Solyc02g055530.2.1	Tomato	extracellular	2.74	67.24
TraesCS7B01G292700.1	Wheat	plasma membrane	67.44	67.2
HORVU3Hr1G053350.8	Barley	vacuole	68.63	67.12
HORVU7Hr1G092510.2	Barley	plasma membrane	67.58	66.83
TraesCS3A01G218000.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.93	66.8
TraesCS7A01G391100.1	Wheat	plasma membrane	67.51	66.67
TraesCS3D01G234300.2	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.79	66.67
TraesCS3B01G248500.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.79	66.67
TraesCS7D01G386600.1	Wheat	plasma membrane	67.58	66.64
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	67.51	66.44
TraesCS3A01G272800.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	67.02	66.32
Os01t0609200-00	Rice	plasma membrane	68.0	66.19
HORVU3Hr1G071470.1	Barley	cytosol, mitochondrion, nucleus, plasma membrane	66.88	66.18
EES03255	Sorghum	cytosol, peroxisome, plasma membrane, plastid	67.93	66.17
TraesCS2A01G483300.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	67.16	66.05
TraesCS3D01G272200.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	66.74	66.04
KRH47220	Soybean	plasma membrane	44.07	66.04
GSMUA_Achr9P01490_001	Banana	plasma membrane	68.91	65.77
HORVU7Hr1G092380.8	Barley	cytosol	66.74	65.72
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	67.44	65.69
HORVU3Hr1G053380.1	Barley	cytosol, mitochondrion, peroxisome, plasma membrane	67.86	65.56
Os01t0609000-00	Rice	plasma membrane	67.44	65.46
TraesCSU01G097600.2	Wheat	plasma membrane	66.6	65.36
TraesCS7A01G391000.1	Wheat	plasma membrane	66.6	65.36
TraesCS7D01G386500.1	Wheat	plasma membrane	66.6	65.36
EER98908	Sorghum	cytosol, nucleus, plasma membrane	66.67	65.02
TraesCS3B01G523700.1	Wheat	mitochondrion	48.7	64.86
KRH09795	Soybean	endoplasmic reticulum	68.77	64.81
TraesCS3B01G524400.1	Wheat	cytosol, peroxisome, plasma membrane	65.12	64.53
KXG32860	Sorghum	plasma membrane	66.25	64.52
TraesCS3D01G474700.1	Wheat	cytosol, nucleus, plasma membrane	65.4	64.5
TraesCS3B01G306400.2	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	66.6	64.3
TraesCS3A01G479800.1	Wheat	cytosol, nucleus, plasma membrane	65.12	64.22
HORVU3Hr1G105140.4	Barley	cytosol, peroxisome, plasma membrane	65.12	64.18
TraesCS5B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	65.05	64.02
TraesCS5D01G190600.1	Wheat	cytosol, nucleus, plasma membrane	65.05	64.02
HORVU5Hr1G056280.6	Barley	cytosol, nucleus, plasma membrane	65.12	64.0
TraesCS5A01G185500.1	Wheat	cytosol, nucleus, plasma membrane	61.89	63.18
TraesCS2B01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	54.95	63.04
Zm00001d044442_P036	Maize	plasma membrane	69.61	63.02
EER98758	Sorghum	cytosol, nucleus, plasma membrane	64.07	63.01
TraesCS2D01G130000.1	Wheat	cytosol, peroxisome, plasma membrane	62.11	61.84
Os09t0333000-00	Rice	plasma membrane	35.02	61.45
KXG20401	Sorghum	plasma membrane	62.18	61.1
Solyc11g007280.1.1	Tomato	plastid	61.4	59.6
Solyc11g007300.1.1	Tomato	plastid	61.12	59.49
Solyc05g055330.2.1	Tomato	plastid	61.4	59.2
Solyc05g018510.2.1	Tomato	cytosol, peroxisome, plasma membrane	58.88	59.04
KRG95752	Soybean	cytosol, peroxisome, plasma membrane	66.6	58.91
Os09t0332300-00	Rice	plasma membrane	33.89	58.47
Solyc11g067000.1.1	Tomato	extracellular, plastid	60.0	58.44
Solyc12g019620.1.1	Tomato	cytosol, nucleus, plasma membrane	33.82	57.59
TraesCS2A01G127800.1	Wheat	cytosol, peroxisome, plasma membrane	31.37	56.8
Solyc06g065670.2.1	Tomato	plasma membrane	55.72	56.39
Solyc03g120980.2.1	Tomato	plastid	59.3	56.33
TraesCS6A01G107100.1	Wheat	mitochondrion, plasma membrane	49.68	56.28
TraesCS6D01G094800.1	Wheat	plasma membrane	36.42	56.05
Os01t0516900-00	Rice	plasma membrane	26.46	53.7
Solyc02g081870.2.1	Tomato	unclear	51.93	52.82
Solyc06g076930.1.1	Tomato	nucleus	52.42	52.42
Solyc01g101070.2.1	Tomato	plastid	52.21	51.42

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	UniProt:K4DHJ5	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF444
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g098210.1	EnsemblPlants:Solyc12g098210.1.1	TMHMM:TMhelix	UniParc:UPI000276A064
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:65817677..65825405

Molecular Weight (calculated)

161092.0 Da

IEP (calculated)

7.653

GRAVY (calculated)

0.033

Length

1425 amino acids

Sequence
(BLAST)

0001: MEPIDFGNLR GSSLRGSVKG SSRGSFRSDS NSIFRNNNIF NRSSRDEDDE EALKWAALEK LPTFDRLRKG ILFGANEIDI HDLGNQQSKD LVDRLVKVAD
0101: EDNEKFLLKL RDRIDRVGID LPTIEVRYEH LKIEADAYVG SSALPTFINF VTNFIEPLLY SLHIVPNRKR KLTILDDVSG IIKPCRLTLL LGPPGSGKTT
0201: LLLALAGKLD TELKASGKVT YNGHEMNEFV PQRTAAYISQ HDLHIGEMTV RETLQFSARC QGVGSRYEML AELSRREKTA NIKPDPDIDV FMKAAATEGQ
0301: EANVVTDYVL KILGLDICAD TMVGDEMVRG ISGGQKKRVT TGEMLVGPSK ALFMDEISTG LDSSTTYSIV NSLRQTVQIL KGTAVISLLQ PAPETYNLFD
0401: DIILLSDSVI VYQGPREDVI GFFESMGFKC PERKGVADFL QEVTSKKDQQ QYWVRRDEPY RFITSKEFSE AYQAFHVGRK LGNDLAVSFD KRKSHPAALT
0501: TEKYGIGKKQ LFEVCKEREY LLMKRNSFVY IFKFCQLLIM ALISMTIFFR TEMKHDTIDD GGIYSGALFF VIIMNMFNGM SELGMIIYKL PVFFKQRDLL
0601: FFPAWAYAIP SWILKIPVTF VETALWVFLT YYVMGFDPHP SRLFKQFLLL IIVSQMASGL FRFIGAVGRS LGVASIFGSF ALLLQFALGG FVLSRDDVKS
0701: WWIWGYWTSP MMYSVNAILV NEFDGKRWKH IPPNGTEPLG AAVVRGRGFF PDASWYWIGF GALVGFTIVF NICYTIALTY LKPFGKPQAM IPEDSEDAQT
0801: TSAETEDSNS ESQNKKKGMV LPFEPHSITF DDVMYSVGMP QEMKDQGATE DRLVLLKGVS GAFRPGVLTA LMGVSGAGKT TLMDVLAGRK TGGYIEGDIK
0901: ISGYPKKQDT FARISGYCEQ NDIHSPYVTV YESLVYSAWL RLPHNVDTKT RKMFVEQVMD LVELGPLRSA LVGLPGINGL STEQRKRLTI AVELVANPSI
1001: IFMDEPTSGL DARAAAIVMR TVRNTVDTGR TVVCTIHQPS IDIFEAFDEL FLMKRGGQEI YVGPLGRHSC HLIKYFESMP GVSKIKDGYN PATWMLEVTA
1101: SAQEILFGVD FTDLYKKSDL YTRNKALISE LSVPRPGTKD LHFDTKYSQP FWTQCIACLW KQHWSYWRNP TYTAVRFLFT TIIALVFGTM FWDIGGKVSK
1201: SQDLFNAMGC LYATVLFLGT QNSSSVQPVV AVERTVFYRE RAAGMYSALP YAFGQISIEI PYVFMQSVFC GAIMYAMIGF EWTVAKFFWY LFFLFFTLLY
1301: FTFYGMMTVA VTPNVSVAQI VGSFFYGVWN LFSGFIVPRT RIPIWWRWYY WCCPVAWTLY GLVASQFGDL QNKLTDEETV EQFLRRYFGF KHDFLPIVAV
1401: AIVGYTVLFG FTFAFAIKAF NFQTR

Best Arabidopsis Sequence Match ( AT1G15520.2 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVLQKNIIE SEIYDFSLRK PQIQTSICSR FSSRSHTFSC KR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.