Factsheet for Solyc03g120980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006729	Potato	plastid	97.67	97.67
CDY69529	Canola	plasma membrane	36.47	76.61
TraesCS7B01G271500.1	Wheat	cytosol	30.93	75.57
CDX67921	Canola	plasma membrane, plastid	69.6	75.11
KRH23404	Soybean	plasma membrane	73.93	74.58
GSMUA_Achr9P16240_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	74.27	74.27
Bra003527.1-P	Field mustard	plasma membrane, plastid	71.0	73.96
CDY30162	Canola	plasma membrane	43.8	73.9
CDY70099	Canola	cytosol	21.13	73.72
CDY39621	Canola	plastid	70.13	73.26
Os06t0554800-01	Rice	plasma membrane	56.87	73.09
OQU76555	Sorghum	mitochondrion, plasma membrane	62.87	72.93
CDX97743	Canola	plasma membrane	68.67	72.89
AT1G59870.1	Thale cress	plasma membrane, plastid	71.27	72.77
CDY36534	Canola	plastid	69.6	72.75
AT3G16340.1	Thale cress	plasma membrane	68.67	72.74
Bra026156.1-P	Field mustard	plastid	69.8	72.51
HORVU7Hr1G088630.1	Barley	vacuole	62.67	72.31
GSMUA_Achr11P...	Banana	plasma membrane	68.87	71.74
Bra021173.1-P	Field mustard	plasma membrane	67.53	71.69
Bra016669.1-P	Field mustard	plastid	68.53	71.54
CDY20193	Canola	plasma membrane, plastid	65.73	71.14
CDX83991	Canola	plastid	69.2	70.71
TraesCS7A01G356200.1	Wheat	plasma membrane	56.13	70.58
Zm00001d036986_P002	Maize	plasma membrane	69.2	68.83
Zm00001d046277_P002	Maize	cytosol, nucleus, plasma membrane	70.13	68.31
CDY68747	Canola	plastid	38.73	67.95
CDY69102	Canola	plastid	38.47	67.72
Solyc02g055530.2.1	Tomato	extracellular	2.6	67.24
EES01392	Sorghum	cytosol, peroxisome, plasma membrane	63.27	64.08
Zm00001d043598_P003	Maize	cytosol, nucleus, plasma membrane	63.47	63.98
Solyc05g053590.2.1	Tomato	cytosol, mitochondrion, peroxisome, plasma membrane	57.53	61.12
Solyc12g019640.1.1	Tomato	plasma membrane	24.73	61.02
Solyc09g091660.2.1	Tomato	plastid	57.07	59.44
Solyc12g098210.1.1	Tomato	plastid	56.33	59.3
Solyc12g100180.1.1	Tomato	mitochondrion, nucleus, plasma membrane, plastid	56.6	59.16
Solyc08g067620.2.1	Tomato	nucleus	57.0	58.84
Solyc11g007300.1.1	Tomato	plastid	56.33	57.72
Solyc11g067000.1.1	Tomato	extracellular, plastid	55.93	57.35
Solyc05g018510.2.1	Tomato	cytosol, peroxisome, plasma membrane	54.27	57.28
Solyc11g007280.1.1	Tomato	plastid	55.8	57.02
Solyc05g055330.2.1	Tomato	plastid	55.47	56.29
Solyc06g065670.2.1	Tomato	plasma membrane	51.73	55.11
Solyc06g076930.1.1	Tomato	nucleus	51.93	54.67
Solyc01g101070.2.1	Tomato	plastid	52.0	53.9
Solyc02g081870.2.1	Tomato	unclear	50.33	53.89
Bra027171.1-P	Field mustard	plasma membrane	68.6	53.54
Solyc12g019620.1.1	Tomato	cytosol, nucleus, plasma membrane	28.33	50.78

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	UniProt:K4BMP7	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF224
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g120980.2	EnsemblPlants:Solyc03g120980.2.1	TMHMM:TMhelix	UniParc:UPI0002766F53
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:69204694..69213842

Molecular Weight (calculated)

170129.0 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.019

Length

1500 amino acids

Sequence
(BLAST)

0001: MEGEKVNGGP RRLGSSRSSM SRTMSRSRSR ASWMVEDVFN PMPSRRSTRG EEDEEALTWA ALERLPTYDR LRKTVLKSFA ESENQGNKKV VHKEVDVRNL
0101: GFNERQEFID RFFRVAEEDN EKFLRKFRNR IDKVGITLPT VEVRYEHLTI EADCYIGDRA LPSLPNAARN IAESALSCVG INLAEKTKLT ILKDASGIIK
0201: PSRMTLLLGP PSSGKTTLLL ALAGKLDPSL KVKGEITYNG HGLKEFVPQK SSAYISQNDV HVAEMTVKET LDFSARCQGV GSRYELLTEL ARRERDAGIF
0301: PEAEIDLFMK ATAVEGLESS LITDYTLRIL GLDVCRDTIV GDEMIRGISG GQKKRVTTGE MIVGPTKTLF MDEISTGLDS STTFQIVKCL QQIVHLTEAT
0401: ILMSLLQPAP ETFDLFDDII LLSEGQIVYQ GPREHVLEFF ETCGFKCPER KGTADFLQEV TSKKDQEQYW VNKHKPYQYI SVTEFAKRFK RFHVGLRIEN
0501: ELSVPYDKTR SHPAALIFKK YTVPTLELLK TNFDKEWLLI KRNSFVYIFK TVQIVIVALI ASTVFLRTKM HHETEDDGGV YVGALIFGMV CNMFNGFSEL
0601: SLIIQRLPVF YKHRDLLFHP PWTFTLPTVL LKVPISVFET IVWMVMTYYT IGFAPEASRF FKQSLLIFLI QQMAAGLFRL TAGVCRTMII ANTGGALTLL
0701: LVFLLGGFIL PRGSIPDWWQ WGFWVSPLSY GFNAFTVNEM FAPRWMNRAA SDGITRLGVQ VMRSFDVFAE KRWFWIGAAA LLGFAILFNV LFTFVLMYLS
0801: PLNKPQAILS KEQARDMEAD QEESRDPPRL RVNRSKRDDL PRSLSAADGN RTREMEIRRM SSRTGSTGLH RNEDANLEAA NGVAAKKGMI LPFTPLAMSF
0901: EDVSYFVDMP PEMRDQGVTE DRLQLLREVT GAFRPGVLTA LMGVSGAGKT TLMDVLAGRK TGGYIEGDVR ISGFPKNQET FARVSGYCEQ TDIHSPQVTI
1001: HESLLFSAFL RLPKEVRKED KMVFVDEVMD LVELDNLKDA IVGLPGVTGL STEQRKRLTI AVELVANPSI IFMDEPTSGL DARAAAIVMR TVRNTVDTGR
1101: TVVCTIHQPS IDIFEAFDEL LLMKRGGQVI YAGPLGRHSQ KIIDYFEAIP GVQKIKEKYN PATWMLEASS ISSETRLGMD FAEYYRSSAL HQRNKALVND
1201: LSTPPPGAKD LYFTTQYSQP TWGQFKSCFW KQWWTYWRSP DYNLVRFFFS LAAALMIGTI FWNIGSKIVT SGDLMIVIGA MYAAVLFVGI NNCSTVQPIV
1301: AVERTVFYRE RAAGMYSALP YAMAQVIAEI PYVLIQTTYY TLIVYAMIGF EWTAAKFFWF YFVTFFSFLY WTYYGMMTVS ITPNHQVAAI FAAAFYALFN
1401: LFSGFFIPRP RIPKWWIWYY WICPVAWTVY GCIVSQYGDV EATIKVPNMA RDPMIKDYIK DHFGYNPDFM GPVAVVLVGF AVFFAFMYSY AIKTLNFQTR

Best Arabidopsis Sequence Match ( AT1G59870.1 )
(BLAST)

0001: MDYNPNLPPL GGGGVSMRRS ISRSVSRASR NIEDIFSSGS RRTQSVNDDE EALKWAAIEK LPTYSRLRTT LMNAVVEDDV YGNQLMSKEV DVTKLDGEDR
0101: QKFIDMVFKV AEQDNERILT KLRNRIDRVG IKLPTVEVRY EHLTIKADCY TGNRSLPTLL NVVRNMGESA LGMIGIQFAK KAQLTILKDI SGVIKPGRMT
0201: LLLGPPSSGK TTLLLALAGK LDKSLQVSGD ITYNGYQLDE FVPRKTSAYI SQNDLHVGIM TVKETLDFSA RCQGVGTRYD LLNELARREK DAGIFPEADV
0301: DLFMKASAAQ GVKNSLVTDY TLKILGLDIC KDTIVGDDMM RGISGGQKKR VTTGEMIVGP TKTLFMDEIS TGLDSSTTFQ IVKCLQQIVH LNEATVLMSL
0401: LQPAPETFDL FDDIILVSEG QIVYQGPRDN ILEFFESFGF KCPERKGTAD FLQEVTSKKD QEQYWVNPNR PYHYIPVSEF ASRYKSFHVG TKMSNELAVP
0501: FDKSRGHKAA LVFDKYSVSK RELLKSCWDK EWLLMQRNAF FYVFKTVQIV IIAAITSTLF LRTEMNTRNE GDANLYIGAL LFGMIINMFN GFAEMAMMVS
0601: RLPVFYKQRD LLFYPSWTFS LPTFLLGIPS SILESTAWMV VTYYSIGFAP DASRFFKQFL LVFLIQQMAA SLFRLIASVC RTMMIANTGG ALTLLLVFLL
0701: GGFLLPKGKI PDWWGWAYWV SPLTYAFNGL VVNEMFAPRW MNKMASSNST IKLGTMVLNT WDVYHQKNWY WISVGALLCF TALFNILFTL ALTYLNPLGK
0801: KAGLLPEEEN EDADQGKDPM RRSLSTADGN RRGEVAMGRM SRDSAAEASG GAGNKKGMVL PFTPLAMSFD DVKYFVDMPG EMRDQGVTET RLQLLKGVTG
0901: AFRPGVLTAL MGVSGAGKTT LMDVLAGRKT GGYIEGDVRI SGFPKVQETF ARISGYCEQT DIHSPQVTVR ESLIFSAFLR LPKEVGKDEK MMFVDQVMEL
1001: VELDSLRDSI VGLPGVTGLS TEQRKRLTIA VELVANPSII FMDEPTSGLD ARAAAIVMRA VRNTVDTGRT VVCTIHQPSI DIFEAFDELM LMKRGGQVIY
1101: AGPLGQNSHK VVEYFESFPG VSKIPEKYNP ATWMLEASSL AAELKLSVDF AELYNQSALH QRNKALVKEL SVPPAGASDL YFATQFSQNT WGQFKSCLWK
1201: QWWTYWRSPD YNLVRFIFTL ATSLLIGTVF WQIGGNRSNA GDLTMVIGAL YAAIIFVGIN NCSTVQPMVA VERTVFYRER AAGMYSAMPY AISQVTCELP
1301: YVLIQTVYYS LIVYAMVGFE WKAEKFFWFV FVSYFSFLYW TYYGMMTVSL TPNQQVASIF ASAFYGIFNL FSGFFIPRPK IPKWWIWYYW ICPVAWTVYG
1401: LIVSQYGDVE TRIQVLGGAP DLTVKQYIED HYGFQSDFMG PVAAVLIAFT VFFAFIFAFC IRTLNFQTR

Arabidopsis Description

ABCG36ABC transporter G family member 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIE2]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.