Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040073.1-P | Field mustard | peroxisome | 84.12 | 87.79 |
| CDY61397 | Canola | plasma membrane, plastid | 71.03 | 86.73 |
| Bra023959.1-P | Field mustard | peroxisome | 81.89 | 85.71 |
| CDY13477 | Canola | peroxisome | 81.62 | 85.42 |
| CDY53698 | Canola | plasma membrane | 79.94 | 72.47 |
| GSMUA_Achr4P09910_001 | Banana | plasma membrane | 62.4 | 72.26 |
| CDX72350 | Canola | plasma membrane | 76.04 | 70.54 |
| TraesCS6A01G229900.2 | Wheat | plasma membrane | 62.95 | 66.47 |
| TraesCS6D01G205100.1 | Wheat | plasma membrane | 62.67 | 66.18 |
| TraesCS6B01G251900.2 | Wheat | plasma membrane | 62.67 | 66.18 |
| HORVU6Hr1G056950.2 | Barley | plasma membrane | 62.67 | 66.18 |
| EES05418 | Sorghum | cytosol, peroxisome, plasma membrane | 64.07 | 65.9 |
| Os02t0614100-01 | Rice | plasma membrane | 63.51 | 65.9 |
| Zm00001d051081_P002 | Maize | cytosol, peroxisome, plasma membrane | 62.67 | 64.66 |
| GSMUA_Achr6P36420_001 | Banana | cytosol, peroxisome, plasma membrane | 31.48 | 57.65 |
| AT2G14695.1 | Thale cress | peroxisome | 54.87 | 56.94 |
| Zm00001d017205_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 63.51 | 53.02 |
| GSMUA_Achr6P36410_001 | Banana | cytosol, extracellular, mitochondrion, plasma membrane | 24.51 | 44.22 |
| AT4G31600.1 | Thale cress | cytosol, plasma membrane, vacuole | 24.51 | 27.24 |
Protein Annotations
| MapMan:24.2.1.1.8 | EntrezGene:5008177 | ProteinID:AEE86031.1 | ArrayExpress:AT4G32272 | EnsemblPlantsGene:AT4G32272 | RefSeq:AT4G32272 |
| TAIR:AT4G32272 | RefSeq:AT4G32272-TAIR-G | EnsemblPlants:AT4G32272.2 | TAIR:AT4G32272.2 | Unigene:At.71204 | UniProt:F4JU87 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008643 |
| GO:GO:0015165 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0090481 | RefSeq:NP_001190887.1 | PFAM:PF03151 |
| PO:PO:0000293 | PANTHER:PTHR44680 | PANTHER:PTHR44680:SF2 | InterPro:Sugar_P_trans_dom | TMHMM:TMhelix | UniParc:UPI0001E92FC2 |
| SEG:seg | : | : | : | : | : |
Description
Nucleotide/sugar transporter family protein [Source:UniProtKB/TrEMBL;Acc:F4JU87]
Coordinates
chr4:-:15576847..15579880
Molecular Weight (calculated)
39430.9 Da
IEP (calculated)
9.397
GRAVY (calculated)
0.654
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNNPVLPVS DPPLAGENDS DGKGVDDRLF KGSAMTKRGA YAALSYMACA VLVFSRIRFS GFRSSFMLVL FNKAALSSYD FPCVNVITLF QMVSSSLFLY
101: ALRRRKIISF TAADSFSIDS ASTFVPVKTL FHTLPLAIAY LLYMLASMAS VRGVNVPMYT TLRRTTVAFT MVIEYMLTGQ RYTRSIIGSV GIILLGAFFA
201: GARDLSFDFY GYGVVFLANI STAVYLATIA RTGKSSGLNS FGLMWSNGII CGPILMIWTF ICGDLEKTIN FPHLLTPGFM VVLLCSCVLA FVLNYCIFLN
301: TTLNSALTQT ICGNMKDLFT VGLGWMLFGG LPFDLMNVIG QLFGFFGSGL YAYYKIIGR
101: ALRRRKIISF TAADSFSIDS ASTFVPVKTL FHTLPLAIAY LLYMLASMAS VRGVNVPMYT TLRRTTVAFT MVIEYMLTGQ RYTRSIIGSV GIILLGAFFA
201: GARDLSFDFY GYGVVFLANI STAVYLATIA RTGKSSGLNS FGLMWSNGII CGPILMIWTF ICGDLEKTIN FPHLLTPGFM VVLLCSCVLA FVLNYCIFLN
301: TTLNSALTQT ICGNMKDLFT VGLGWMLFGG LPFDLMNVIG QLFGFFGSGL YAYYKIIGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.