Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39086 | Canola | nucleus | 96.56 | 95.74 |
| CDY33260 | Canola | nucleus | 92.84 | 92.05 |
| Bra027381.1-P | Field mustard | nucleus | 74.5 | 71.04 |
| AT3G13980.1 | Thale cress | nucleus | 67.05 | 65.55 |
| Bra037972.1-P | Field mustard | nucleus | 47.85 | 58.39 |
| Bra030898.1-P | Field mustard | nucleus | 48.42 | 55.23 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 41.83 | 48.83 |
| PGSC0003DMT400030328 | Potato | nucleus | 20.63 | 41.86 |
| KRH06149 | Soybean | nucleus | 49.0 | 39.68 |
| Solyc03g121970.1.1 | Tomato | nucleus | 45.85 | 39.22 |
| KRH47572 | Soybean | nucleus | 47.56 | 38.6 |
| PGSC0003DMT400030330 | Potato | nucleus | 22.35 | 36.79 |
| Bra006139.1-P | Field mustard | nucleus | 31.23 | 33.64 |
| Bra008918.1-P | Field mustard | nucleus | 30.95 | 31.76 |
| Bra023361.1-P | Field mustard | nucleus | 30.37 | 31.64 |
Protein Annotations
Description
AT3G13980 (E=4e-079) | unknown protein
Coordinates
chrA01:+:24764767..24765816
Molecular Weight (calculated)
38565.7 Da
IEP (calculated)
9.126
GRAVY (calculated)
-0.767
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: METWEKPSSR GHHRNPSFSS TLLDHIYRSI DDNSPPLEPT RKKKPLHEDL DTSPDKLVFH RRSIAADFER SRRTTTTAAA ADSVFLRYSN STSSDSSGLS
101: SSESDSFYGR SKSSASPPQP KPIRTSAVSS GERTNTKQEL GGFLRTKSKA LKIYTDLKKA KQPISPGGRL ATFLNSLFTN ASTNPKKPKK NTTSISVLSE
201: TQSSSTTCSS ASSFSRSCLS KTPSSSGKSK RSVRFCPVNV ILDEDSSVYI PCGNDTKRYR QVMEEENRRV IEAAKDLIRT YQKNKDLLAV TTCHDVEDDD
301: DAASCASSDL FELENLSAIG IERYQEELPV YETTRLDNTN RAVATSLTV
101: SSESDSFYGR SKSSASPPQP KPIRTSAVSS GERTNTKQEL GGFLRTKSKA LKIYTDLKKA KQPISPGGRL ATFLNSLFTN ASTNPKKPKK NTTSISVLSE
201: TQSSSTTCSS ASSFSRSCLS KTPSSSGKSK RSVRFCPVNV ILDEDSSVYI PCGNDTKRYR QVMEEENRRV IEAAKDLIRT YQKNKDLLAV TTCHDVEDDD
301: DAASCASSDL FELENLSAIG IERYQEELPV YETTRLDNTN RAVATSLTV
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.