Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021523.1-P | Field mustard | nucleus | 65.55 | 67.05 |
| CDY39086 | Canola | nucleus | 65.55 | 66.48 |
| CDY33260 | Canola | nucleus | 64.15 | 65.06 |
| Bra027381.1-P | Field mustard | nucleus | 64.43 | 62.84 |
| CDX97534 | Canola | nucleus | 56.58 | 62.35 |
| CDY55213 | Canola | nucleus | 51.54 | 60.53 |
| AT1G54200.1 | Thale cress | nucleus | 54.9 | 53.55 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 43.14 | 51.51 |
| PGSC0003DMT400030328 | Potato | nucleus | 20.17 | 41.86 |
| KRH06149 | Soybean | nucleus | 49.58 | 41.07 |
| Solyc03g121970.1.1 | Tomato | nucleus | 46.78 | 40.93 |
| KRH47572 | Soybean | nucleus | 47.9 | 39.77 |
| PGSC0003DMT400030330 | Potato | nucleus | 21.29 | 35.85 |
| AT5G12050.1 | Thale cress | nucleus | 34.17 | 33.7 |
| AT3G42800.1 | Thale cress | nucleus | 13.45 | 14.08 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820612 | UniProt:A0A178VBF1 | ProteinID:AEE75447.1 | ArrayExpress:AT3G13980 | EnsemblPlantsGene:AT3G13980 |
| RefSeq:AT3G13980 | TAIR:AT3G13980 | RefSeq:AT3G13980-TAIR-G | EnsemblPlants:AT3G13980.1 | TAIR:AT3G13980.1 | ProteinID:BAB02328.1 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0010929 | GO:GO:0016020 |
| GO:GO:0060918 | RefSeq:NP_188014.1 | ProteinID:OAP03657.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 | UniProt:Q9LVK2 | UniParc:UPI000009E031 | SEG:seg | : |
Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
Coordinates
chr3:-:4618939..4620305
Molecular Weight (calculated)
40078.5 Da
IEP (calculated)
9.859
GRAVY (calculated)
-0.897
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.