Skip to main content
crop-pal logo
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78464 Canola nucleus 63.54 70.34
Bra006139.1-P Field mustard nucleus 62.43 69.75
Bra008918.1-P Field mustard nucleus 62.71 66.76
CDX69710 Canola nucleus 62.15 66.37
CDX97165 Canola cytosol, nucleus, peroxisome 61.05 65.97
CDX70442 Canola nucleus 60.77 55.84
AT3G13980.1 Thale cress nucleus 33.7 34.17
AT1G54200.1 Thale cress nucleus 33.15 32.79
KRH52238 Soybean nucleus 32.32 30.39
KRH61567 Soybean mitochondrion, nucleus 32.04 29.44
VIT_04s0008g01700.t01 Wine grape nucleus 33.15 28.24
KRH15613 Soybean nucleus 30.11 26.91
PGSC0003DMT400055964 Potato nucleus 28.73 26.87
Solyc08g062180.1.1 Tomato nucleus 28.73 26.87
KRH05403 Soybean nucleus 30.94 26.67
AT3G42800.1 Thale cress nucleus 11.33 12.02
Protein Annotations
MapMan:35.1EntrezGene:831078UniProt:A0A178ULE7ProteinID:AED91756.1EMBL:AF370183ArrayExpress:AT5G12050
EnsemblPlantsGene:AT5G12050RefSeq:AT5G12050TAIR:AT5G12050RefSeq:AT5G12050-TAIR-GEnsemblPlants:AT5G12050.1TAIR:AT5G12050.1
EMBL:AY059141EMBL:AY087600ProteinID:CAB87678.1GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0006810GO:GO:0007154GO:GO:0007165GO:GO:0007623GO:GO:0008150GO:GO:0009719
GO:GO:0009734GO:GO:0009987GO:GO:0010929GO:GO:0016020GO:GO:0060918RefSeq:NP_196766.1
ProteinID:OAO94157.1PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PANTHER:PTHR33541PANTHER:PTHR33541:SF2UniProt:Q9LYH0UniParc:UPI000009E7C1SEG:seg:
Description
Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
Coordinates
chr5:+:3889906..3891514
Molecular Weight (calculated)
41033.6 Da
IEP (calculated)
8.891
GRAVY (calculated)
-1.119
Length
362 amino acids
Sequence
(BLAST)
001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.