Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX78464 | Canola | nucleus | 63.54 | 70.34 |
Bra006139.1-P | Field mustard | nucleus | 62.43 | 69.75 |
Bra008918.1-P | Field mustard | nucleus | 62.71 | 66.76 |
CDX69710 | Canola | nucleus | 62.15 | 66.37 |
CDX97165 | Canola | cytosol, nucleus, peroxisome | 61.05 | 65.97 |
CDX70442 | Canola | nucleus | 60.77 | 55.84 |
AT3G13980.1 | Thale cress | nucleus | 33.7 | 34.17 |
AT1G54200.1 | Thale cress | nucleus | 33.15 | 32.79 |
KRH52238 | Soybean | nucleus | 32.32 | 30.39 |
KRH61567 | Soybean | mitochondrion, nucleus | 32.04 | 29.44 |
VIT_04s0008g01700.t01 | Wine grape | nucleus | 33.15 | 28.24 |
KRH15613 | Soybean | nucleus | 30.11 | 26.91 |
PGSC0003DMT400055964 | Potato | nucleus | 28.73 | 26.87 |
Solyc08g062180.1.1 | Tomato | nucleus | 28.73 | 26.87 |
KRH05403 | Soybean | nucleus | 30.94 | 26.67 |
AT3G42800.1 | Thale cress | nucleus | 11.33 | 12.02 |
Protein Annotations
MapMan:35.1 | EntrezGene:831078 | UniProt:A0A178ULE7 | ProteinID:AED91756.1 | EMBL:AF370183 | ArrayExpress:AT5G12050 |
EnsemblPlantsGene:AT5G12050 | RefSeq:AT5G12050 | TAIR:AT5G12050 | RefSeq:AT5G12050-TAIR-G | EnsemblPlants:AT5G12050.1 | TAIR:AT5G12050.1 |
EMBL:AY059141 | EMBL:AY087600 | ProteinID:CAB87678.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0009719 |
GO:GO:0009734 | GO:GO:0009987 | GO:GO:0010929 | GO:GO:0016020 | GO:GO:0060918 | RefSeq:NP_196766.1 |
ProteinID:OAO94157.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
PANTHER:PTHR33541 | PANTHER:PTHR33541:SF2 | UniProt:Q9LYH0 | UniParc:UPI000009E7C1 | SEG:seg | : |
Description
Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
Coordinates
chr5:+:3889906..3891514
Molecular Weight (calculated)
41033.6 Da
IEP (calculated)
8.891
GRAVY (calculated)
-1.119
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.