Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33081 | Canola | nucleus | 59.84 | 68.65 |
| Bra030898.1-P | Field mustard | nucleus | 57.1 | 68.3 |
| CDY10614 | Canola | nucleus | 55.74 | 67.33 |
| Bra037972.1-P | Field mustard | nucleus | 51.91 | 66.43 |
| CDY24062 | Canola | nucleus | 59.02 | 65.85 |
| AT3G13980.1 | Thale cress | nucleus | 53.55 | 54.9 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 39.62 | 48.49 |
| Solyc03g121970.1.1 | Tomato | nucleus | 45.36 | 40.69 |
| KRH47572 | Soybean | nucleus | 46.45 | 39.53 |
| KRH06149 | Soybean | nucleus | 46.45 | 39.44 |
| PGSC0003DMT400030328 | Potato | nucleus | 18.31 | 38.95 |
| PGSC0003DMT400030330 | Potato | nucleus | 20.22 | 34.91 |
| AT5G12050.1 | Thale cress | nucleus | 32.79 | 33.15 |
| AT3G42800.1 | Thale cress | nucleus | 13.11 | 14.08 |
Protein Annotations
| MapMan:35.1 | EntrezGene:841860 | ProteinID:AAD25600.1 | ProteinID:AEE33060.1 | ArrayExpress:AT1G54200 | EnsemblPlantsGene:AT1G54200 |
| RefSeq:AT1G54200 | TAIR:AT1G54200 | RefSeq:AT1G54200-TAIR-G | EnsemblPlants:AT1G54200.1 | TAIR:AT1G54200.1 | EMBL:BT029487 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0010929 |
| GO:GO:0016020 | GO:GO:0060918 | RefSeq:NP_175822.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 |
| UniProt:Q9SLL2 | UniParc:UPI000009E5A1 | SEG:seg | : | : | : |
Description
Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
Coordinates
chr1:+:20235465..20237358
Molecular Weight (calculated)
41772.1 Da
IEP (calculated)
9.798
GRAVY (calculated)
-1.047
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.