CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02474	Canola	nucleus	22.11	94.37
Bra030898.1-P	Field mustard	nucleus	83.5	82.68
CDY33081	Canola	nucleus	70.3	66.77
CDY24062	Canola	nucleus	68.32	63.11
AT1G54200.1	Thale cress	nucleus	67.33	55.74
CDY55213	Canola	nucleus	48.51	48.36
CDX97534	Canola	nucleus	51.16	47.84
CDY39086	Canola	nucleus	54.46	46.88
CDY33260	Canola	nucleus	54.46	46.88
VIT_09s0002g01520.t01	Wine grape	nucleus	43.23	43.81
Solyc03g121970.1.1	Tomato	nucleus	49.17	36.52
CDX91175	Canola	plastid	17.82	35.29
CDX91176	Canola	nucleus, plastid	10.89	34.74
KRH06149	Soybean	nucleus	49.17	34.57
PGSC0003DMT400030328	Potato	nucleus	19.47	34.3
KRH47572	Soybean	nucleus	47.85	33.72
PGSC0003DMT400030330	Potato	nucleus	23.43	33.49
CDX97165	Canola	cytosol, nucleus, peroxisome	34.32	31.04
CDX69710	Canola	nucleus	33.66	30.09
CDX78464	Canola	nucleus	31.35	29.05
CDX85703	Canola	plastid	24.09	27.76
CDX70442	Canola	nucleus	31.68	24.37

Protein Annotations

EnsemblPlants:CDY10614	EnsemblPlantsGene:GSBRNA2T00032595001	ncoils:Coil	PANTHER:PTHR33541	PANTHER:PTHR33541:SF5	ProteinID:CDY10614
ProteinID:CDY10614.1	SEG:seg	UniParc:UPI0004EF05CF	UniProt:A0A078FCE1	MapMan:35.1	:

Description

BnaC03g70000DBnaC03g70000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCE1]

Coordinates

chrLK032004:-:864634..865644

Molecular Weight (calculated)

34166.5 Da

IEP (calculated)

9.511

GRAVY (calculated)

-0.990

Length

303 amino acids

Sequence
(BLAST)

001: MDPWDKTNSL DHHHRRQDHR HPSFSSTLLD QIYNSIDSSS LSDVSMRKKQ NRAVEEIEKI LVNRRAVPGD SVRSRNLKTA EPVFSKHSSS SSSSDSSGLS
101: SSSSDSFYRR SRSPPEIPHP KPIRTTVERR ERPNDNNNKV KSKALEMYSD LKRVKQPNSP GGRLATFLNS IFTGNTKKPN KTATSSSTTC SSASSFSKSC
201: LSKTPSSSEK LKRSVRFLME ENRRVIEAAK ELIRTYQKNK DVVNIIGKEE EDDDEDDDDD GASCASSDLF ELDHLSVIGI GSYREELPVY ETTRFNTNRI
301: ISR

Best Arabidopsis Sequence Match ( AT1G54200.1 )
(BLAST)

001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR

Arabidopsis Description

Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.