CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037972.1-P	Field mustard	nucleus	75.3	86.36
CDY02474	Canola	nucleus	17.99	83.1
CDY33081	Canola	nucleus	78.66	80.88
CDY10614	Canola	nucleus	63.11	68.32
AT1G54200.1	Thale cress	nucleus	65.85	59.02
CDY39086	Canola	nucleus	57.32	53.41
CDY33260	Canola	nucleus	57.01	53.12
CDX97534	Canola	nucleus	52.44	53.09
CDY55213	Canola	nucleus	47.87	51.64
VIT_09s0002g01520.t01	Wine grape	nucleus	41.46	45.48
PGSC0003DMT400030328	Potato	nucleus	21.04	40.12
Solyc03g121970.1.1	Tomato	nucleus	48.78	39.22
KRH06149	Soybean	nucleus	49.39	37.59
KRH47572	Soybean	nucleus	48.17	36.74
CDX91176	Canola	nucleus, plastid	10.06	34.74
PGSC0003DMT400030330	Potato	nucleus	22.26	34.43
CDX97165	Canola	cytosol, nucleus, peroxisome	33.23	32.54
CDX91175	Canola	plastid	14.94	32.03
CDX69710	Canola	nucleus	32.93	31.86
CDX78464	Canola	nucleus	30.79	30.89
CDX85703	Canola	plastid	23.48	29.28
CDX70442	Canola	nucleus	30.79	25.63

Protein Annotations

EnsemblPlants:CDY24062	EnsemblPlantsGene:GSBRNA2T00024594001	ncoils:Coil	PANTHER:PTHR33541	PANTHER:PTHR33541:SF5	ProteinID:CDY24062
ProteinID:CDY24062.1	SEG:seg	UniParc:UPI0004EDD34B	UniProt:A0A078GG01	MapMan:35.1	:

Description

BnaA06g00600DBnaA06g00600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG01]

Coordinates

chrLK032153:-:122510..123496

Molecular Weight (calculated)

37477.3 Da

IEP (calculated)

9.499

GRAVY (calculated)

-1.017

Length

328 amino acids

Sequence
(BLAST)

001: MDPWDNNTTD HQYRRRDHRH PSFSSSLLDQ IYRSTDDSSD VSMRKKQNRA ASLDENRVCL EKILLNRRKT ADDFAVNRRK TAEINTVEPV FFKHSSSSSS
101: DSSGFSSSES DSFYKRTRSS RSPPVIHHHP KPIRTAVERL ERPNNKVKSK ALKMYSDLKK VKQPISPGGR LATFLNSLFT GNTKKPNKTV STATSSHTTC
201: SSASSFSRSC LSKTTSSSEK SKRSVRFCPV NVILDEDSKQ RESIRHHQSR VMEENRRVIE AAKELIRTYR ENKDVEEEDD DDDDDAASCA SSDLFELDNL
301: SSIGIERYRE ELPVYETTRL NTNPIISR

Best Arabidopsis Sequence Match ( AT1G54200.1 )
(BLAST)

001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR

Arabidopsis Description

Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.