CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006139.1-P	Field mustard	nucleus	94.8	95.68
CDX70442	Canola	nucleus	94.19	78.17
CDX97165	Canola	cytosol, nucleus, peroxisome	70.34	68.66
CDX69710	Canola	nucleus	70.03	67.55
AT5G12050.1	Thale cress	nucleus	70.34	63.54
CDX91176	Canola	nucleus, plastid	18.04	62.11
CDX91175	Canola	plastid	22.94	49.02
CDX85703	Canola	plastid	38.84	48.29
CDY02474	Canola	nucleus	8.87	40.85
CDY33081	Canola	nucleus	32.11	32.92
CDX97534	Canola	nucleus	31.5	31.79
CDY55213	Canola	nucleus	29.36	31.58
CDY39086	Canola	nucleus	33.95	31.53
CDY10614	Canola	nucleus	29.05	31.35
CDY33260	Canola	nucleus	33.64	31.25
CDY24062	Canola	nucleus	30.89	30.79
KRH52238	Soybean	nucleus	34.56	29.35
VIT_04s0008g01700.t01	Wine grape	nucleus	37.0	28.47
KRH61567	Soybean	mitochondrion, nucleus	33.33	27.66
KRH05403	Soybean	nucleus	33.95	26.43
Solyc08g062180.1.1	Tomato	nucleus	31.19	26.36
KRH15613	Soybean	nucleus	32.11	25.93
PGSC0003DMT400055964	Potato	nucleus	28.75	24.29

Protein Annotations

EnsemblPlants:CDX78464	EnsemblPlantsGene:GSBRNA2T00129853001	ncoils:Coil	PANTHER:PTHR33541	PANTHER:PTHR33541:SF2	ProteinID:CDX78464
ProteinID:CDX78464.1	SEG:seg	UniParc:UPI0004EEB53B	MapMan:35.1	:	:

Description

BnaA03g03760D

Coordinates

chrLK031815:+:875627..876985

Molecular Weight (calculated)

37099.7 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.924

Length

327 amino acids

Sequence
(BLAST)

001: MHRSKPQSRN PSFSSTLLDE IYNSIDPKTK KTQPFVGSVK KQSISVTRSV PDRKLHQDRF FGSVSSSSDS NSSIFSSSDT ELSHGTKKIT SSRPLCFGPS
101: KTKQSKTEDK ALFHQNRATR VFHDYDYASS NQKKLKTPSS PGVRIVNFIN ALFSKQPTAV KSYPRNTSYD DSAFSRKRTD YYYPSTTCSS ASSFSRSCLN
201: KRSEKSSGRT KPRVRFSPVN VIVPEIEEED YLSSGYVRKS VKKNVEDGGR RSVEEIAREF LRDYHKKHEN SLVKNNNDLE DYEDEDDDVA SDSSSDLFEL
301: DLVGTHHHNL YEDELPVYET TFAGLIL

Best Arabidopsis Sequence Match ( AT5G12050.1 )
(BLAST)

001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL

Arabidopsis Description

Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.