CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61567	Soybean	mitochondrion, nucleus	72.73	71.07
KRH15613	Soybean	nucleus	45.45	43.21
KRH05403	Soybean	nucleus	46.75	42.86
VIT_04s0008g01700.t01	Wine grape	nucleus	47.27	42.82
Solyc08g062180.1.1	Tomato	nucleus	41.3	41.09
PGSC0003DMT400055964	Potato	nucleus	40.78	40.57
KRH06149	Soybean	nucleus	45.19	40.37
KRH47572	Soybean	nucleus	44.16	39.53
CDX91176	Canola	nucleus, plastid	9.35	37.89
CDX97165	Canola	cytosol, nucleus, peroxisome	31.43	36.12
CDX91175	Canola	plastid	14.29	35.95
Bra008918.1-P	Field mustard	nucleus	30.65	34.71
Bra006139.1-P	Field mustard	nucleus	29.09	34.57
CDX78464	Canola	nucleus	29.35	34.56
CDX69710	Canola	nucleus	30.39	34.51
CDX85703	Canola	plastid	22.6	33.08
Bra023361.1-P	Field mustard	nucleus	28.57	32.84
AT5G12050.1	Thale cress	nucleus	30.39	32.32
CDX70442	Canola	nucleus	29.87	29.19
KRH19263	Soybean	nucleus	14.55	14.43
KRH02643	Soybean	nucleus	14.29	13.48

Protein Annotations

EMBL:ACUP02003414	EnsemblPlants:KRH52238	EnsemblPlantsGene:GLYMA_06G055200	EntrezGene:100809904	PANTHER:PTHR33541	PANTHER:PTHR33541:SF2
ProteinID:KRH52238	ProteinID:KRH52238.1	SEG:seg	UniParc:UPI0002339E93	UniProt:I1K8F5	MapMan:35.1

Description

hypothetical protein

Coordinates

chr6:+:4176692..4178562

Molecular Weight (calculated)

43932.2 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.935

Length

385 amino acids

Sequence
(BLAST)

001: MYTTKREQQR FRFQNDSKTP SFSSTLLDKV YRSIDQSNDM KLYNETMGKK QSRVVVEEEE ITAASIRRAC LLEKWNRSEK VGTQWKTQTR WHHHRHHEHD
101: QDVMFFSSTS SSSDSSSGLL SSSDTESLYG LRSKSRFSCF APPRPKPVMT SASNEEGLRK SKSRALKIYN NLKKVKQPIS PGGKLSNFLN SLLATGGSVK
201: KTKTYDDTKA PKSGQDSTCS SASSFSRSCL SKATPSSSKD KLRDGVKRTV RFYPVSVILN EDSRPCGHKC LYEEDTRVMA WKIGRKKNED EELRVVDNSR
301: RVEEAAREFL KEYRRSQKKS DFINLRDFTN LDNDDDDDDA ASCSSSDLFE LDHLAVMGNN RYREDLPVYE TTYVSTNRAI ANGLI

Best Arabidopsis Sequence Match ( AT1G54200.1 )
(BLAST)

001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR

Arabidopsis Description

Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.