Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42800.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02643 | Soybean | nucleus | 81.19 | 77.21 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 30.41 | 39.2 |
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 31.19 | 39.16 |
| AT3G42800.1 | Thale cress | nucleus | 31.7 | 36.07 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 40.21 | 35.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.45 | 32.27 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 23.97 | 32.18 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 23.45 | 31.93 |
| GSMUA_Achr10P... | Banana | nucleus | 21.65 | 27.81 |
| CDY02474 | Canola | nucleus | 3.35 | 18.31 |
| KRH06149 | Soybean | nucleus | 18.3 | 16.47 |
| KRH47572 | Soybean | nucleus | 18.04 | 16.28 |
| KRH52238 | Soybean | nucleus | 14.43 | 14.55 |
| KRH05403 | Soybean | nucleus | 15.46 | 14.29 |
| KRH61567 | Soybean | mitochondrion, nucleus | 14.43 | 14.21 |
| KRH15613 | Soybean | nucleus | 14.69 | 14.07 |
Protein Annotations
| EMBL:ACUP02008171 | EnsemblPlants:KRH19263 | EnsemblPlantsGene:GLYMA_13G108300 | EntrezGene:100779754 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 |
| ProteinID:KRH19263 | ProteinID:KRH19263.1 | SEG:seg | UniParc:UPI0001BA8B12 | UniProt:I1LY37 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr13:+:22262681..22264252
Molecular Weight (calculated)
43304.2 Da
IEP (calculated)
8.381
GRAVY (calculated)
-0.875
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MHERSMKEAA GTCPQRRRTP SFSSSLLDAI YRSIDESKSN LHDDQQLGLH HHDQTTHSFT SEKGGKKERM NLRRAVMLED WMEKHGSHSL NAQLLNSSSS
101: SSECSSAGGI FSSSETDTTT TLTLKKQRPA RLTSEKKKKK QDRIMSSEKQ NKESGFTRTK LRALKIYGEL NQRVKQPISP GSRIASFLSS IFNSQNVKKA
201: KMCYAGAVED VSFEHKSNSP CFSSIPSSFS RRSCMSKTPS SAKKSNNNEV KRSVRFYPVS VILGEDSEPQ SSYHKCNIIY ESEPNLGVRS SSIKELKKNT
301: ARGNENGAEE AAARGFVKGY RNSGQGEFDF RGFYDDDDED DDDDVSCSSS DLFELDHLIG AARYQEELPV YETTNLETNK AIASGLCL
101: SSECSSAGGI FSSSETDTTT TLTLKKQRPA RLTSEKKKKK QDRIMSSEKQ NKESGFTRTK LRALKIYGEL NQRVKQPISP GSRIASFLSS IFNSQNVKKA
201: KMCYAGAVED VSFEHKSNSP CFSSIPSSFS RRSCMSKTPS SAKKSNNNEV KRSVRFYPVS VILGEDSEPQ SSYHKCNIIY ESEPNLGVRS SSIKELKKNT
301: ARGNENGAEE AAARGFVKGY RNSGQGEFDF RGFYDDDDED DDDDVSCSSS DLFELDHLIG AARYQEELPV YETTNLETNK AIASGLCL
001: MAFPQRKRTP SFSSSVLDSV YRSIDESDGL QSDLKGSINE NVSSSSSSPS PNKKDDKLTT LRRAIMDEEH WLYARSSTTT TNSSDSSSFS SSEAESYRTK
101: RRLRKLAEQG KRSGDERQRT KRTVMDNDSR LFSKSDDDKK PKAVKIIEEL KRSKQPVSPG ARLTSFLNSI FQSNAKKVKL CSVGKTTDVK SSSSKSCFSR
201: TRNKTDNNNN NCKKLERSIR FYPVRVTIDG DCRDYAQKHI TRVRKPIPEF TAKKSVKEEI KTNDHHTEFT CITRNIGLKD FVRSNKYEGK EEEEDAWSHS
301: SSDLFELDSY RIGMGRYLKE LPVYETTDFK TNQAIARSLL L
101: RRLRKLAEQG KRSGDERQRT KRTVMDNDSR LFSKSDDDKK PKAVKIIEEL KRSKQPVSPG ARLTSFLNSI FQSNAKKVKL CSVGKTTDVK SSSSKSCFSR
201: TRNKTDNNNN NCKKLERSIR FYPVRVTIDG DCRDYAQKHI TRVRKPIPEF TAKKSVKEEI KTNDHHTEFT CITRNIGLKD FVRSNKYEGK EEEEDAWSHS
301: SSDLFELDSY RIGMGRYLKE LPVYETTDFK TNQAIARSLL L
Arabidopsis Description
Protein BIG GRAIN 1-like C [Source:UniProtKB/Swiss-Prot;Acc:Q9M2B3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.