Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42800.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19263 | Soybean | nucleus | 77.21 | 81.19 |
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 30.64 | 40.45 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 29.66 | 40.2 |
| AT3G42800.1 | Thale cress | nucleus | 30.39 | 36.36 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 37.75 | 35.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.28 | 33.69 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 22.3 | 31.93 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 22.3 | 31.49 |
| GSMUA_Achr10P... | Banana | nucleus | 21.08 | 28.48 |
| CDY02474 | Canola | nucleus | 3.19 | 18.31 |
| KRH47572 | Soybean | nucleus | 17.89 | 16.98 |
| KRH06149 | Soybean | nucleus | 17.89 | 16.94 |
| KRH15613 | Soybean | nucleus | 14.71 | 14.81 |
| KRH05403 | Soybean | nucleus | 15.2 | 14.76 |
| KRH52238 | Soybean | nucleus | 13.48 | 14.29 |
| KRH61567 | Soybean | mitochondrion, nucleus | 13.73 | 14.21 |
Protein Annotations
| EMBL:ACUP02010312 | EnsemblPlants:KRH02643 | EnsemblPlantsGene:GLYMA_17G051100 | EntrezGene:100803228 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 |
| ProteinID:KRH02643 | ProteinID:KRH02643.1 | SEG:seg | UniParc:UPI000233DF78 | UniProt:I1MSC7 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr17:-:3878670..3880313
Molecular Weight (calculated)
45533.0 Da
IEP (calculated)
9.672
GRAVY (calculated)
-0.962
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MHERSMKEAA GTCPQRRRTP SFSSSLLDAI YRSIDESKSN LHDDQQLGHH HHHDQTLATH SFTSEEKGGK KERMNLRRAV MLEDWMEKYG SSRSLNAQLL
101: NSSSSSSECS SAGGIFSSSE TDTTTTTLKK QRPARPTSEK KKKKKKKQDH IMSSEKKNKE GGFARTKLRA LKIYGELNQR VKQPISPGSR IASFLSSIFN
201: SQNVKKAKMC YVGAVEDVSF EHKSKSPCFS STPSSFSRRS CMSKTPSSAK KPNNNGVKRS VRFYPVSVIL GEDSEPQSNS HSHNKKCNNI YESESNLTVR
301: KITRSSSIKE LKKNTVRGKE NATEEAAARG FVKGYRNSGK GEFDFIGFYG NGENENDEND DDDDVSCSSS DLFELDHLIG AARYQEELPV YETTNLETNK
401: AIASGLCL
101: NSSSSSSECS SAGGIFSSSE TDTTTTTLKK QRPARPTSEK KKKKKKKQDH IMSSEKKNKE GGFARTKLRA LKIYGELNQR VKQPISPGSR IASFLSSIFN
201: SQNVKKAKMC YVGAVEDVSF EHKSKSPCFS STPSSFSRRS CMSKTPSSAK KPNNNGVKRS VRFYPVSVIL GEDSEPQSNS HSHNKKCNNI YESESNLTVR
301: KITRSSSIKE LKKNTVRGKE NATEEAAARG FVKGYRNSGK GEFDFIGFYG NGENENDEND DDDDVSCSSS DLFELDHLIG AARYQEELPV YETTNLETNK
401: AIASGLCL
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.