Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 30.21 | 33.33 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 29.03 | 32.89 |
| KRH19263 | Soybean | nucleus | 36.07 | 31.7 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 26.39 | 31.14 |
| KRH02643 | Soybean | nucleus | 36.36 | 30.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.63 | 29.79 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 34.9 | 27.42 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 22.29 | 26.67 |
| GSMUA_Achr10P... | Banana | nucleus | 23.17 | 26.16 |
| CDY02474 | Canola | nucleus | 4.11 | 19.72 |
| AT3G13980.1 | Thale cress | nucleus | 14.08 | 13.45 |
| AT1G54200.1 | Thale cress | nucleus | 14.08 | 13.11 |
| AT5G12050.1 | Thale cress | nucleus | 12.02 | 11.33 |
Protein Annotations
| MapMan:35.1 | EntrezGene:823322 | ProteinID:AEE77753.1 | EMBL:AK175521 | EMBL:AK222200 | ArrayExpress:AT3G42800 |
| EnsemblPlantsGene:AT3G42800 | RefSeq:AT3G42800 | TAIR:AT3G42800 | RefSeq:AT3G42800-TAIR-G | EnsemblPlants:AT3G42800.1 | TAIR:AT3G42800.1 |
| EMBL:BT011741 | ProteinID:CAB87197.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| GO:GO:0010929 | GO:GO:0016020 | GO:GO:0060918 | RefSeq:NP_189866.1 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009030 | PO:PO:0009032 | PO:PO:0020137 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 | UniProt:Q9M2B3 |
| UniParc:UPI00000A5EB0 | SEG:seg | : | : | : | : |
Description
Protein BIG GRAIN 1-like C [Source:UniProtKB/Swiss-Prot;Acc:Q9M2B3]
Coordinates
chr3:+:14905230..14907035
Molecular Weight (calculated)
38961.5 Da
IEP (calculated)
10.186
GRAVY (calculated)
-1.019
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPQRKRTP SFSSSVLDSV YRSIDESDGL QSDLKGSINE NVSSSSSSPS PNKKDDKLTT LRRAIMDEEH WLYARSSTTT TNSSDSSSFS SSEAESYRTK
101: RRLRKLAEQG KRSGDERQRT KRTVMDNDSR LFSKSDDDKK PKAVKIIEEL KRSKQPVSPG ARLTSFLNSI FQSNAKKVKL CSVGKTTDVK SSSSKSCFSR
201: TRNKTDNNNN NCKKLERSIR FYPVRVTIDG DCRDYAQKHI TRVRKPIPEF TAKKSVKEEI KTNDHHTEFT CITRNIGLKD FVRSNKYEGK EEEEDAWSHS
301: SSDLFELDSY RIGMGRYLKE LPVYETTDFK TNQAIARSLL L
101: RRLRKLAEQG KRSGDERQRT KRTVMDNDSR LFSKSDDDKK PKAVKIIEEL KRSKQPVSPG ARLTSFLNSI FQSNAKKVKL CSVGKTTDVK SSSSKSCFSR
201: TRNKTDNNNN NCKKLERSIR FYPVRVTIDG DCRDYAQKHI TRVRKPIPEF TAKKSVKEEI KTNDHHTEFT CITRNIGLKD FVRSNKYEGK EEEEDAWSHS
301: SSDLFELDSY RIGMGRYLKE LPVYETTDFK TNQAIARSLL L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.