Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42800.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 30.41 | 42.72 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 29.03 | 41.86 |
| KRH19263 | Soybean | nucleus | 35.94 | 40.21 |
| KRH02643 | Soybean | nucleus | 35.48 | 37.75 |
| AT3G42800.1 | Thale cress | nucleus | 27.42 | 34.9 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 22.58 | 33.91 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 22.12 | 33.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.74 | 31.91 |
| GSMUA_Achr10P... | Banana | nucleus | 19.12 | 27.48 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 14.75 | 21.4 |
| VIT_04s0008g01700.t01 | Wine grape | nucleus | 15.21 | 15.53 |
| CDY02474 | Canola | nucleus | 2.53 | 15.49 |
Protein Annotations
| ArrayExpress:VIT_11s0016g01450 | EMBL:FN595756 | EnsemblPlants:VIT_11s0016g01450.t01 | EnsemblPlantsGene:VIT_11s0016g01450 | EntrezGene:100242162 | EntrezGene:LOC100242162 |
| PANTHER:PTHR33541 | PANTHER:PTHR33541:SF7 | ProteinID:CCB51418 | ProteinID:CCB51418.1 | RefSeq:XP_002278368 | RefSeq:XP_002278368.1 |
| SEG:seg | UniParc:UPI000210848A | UniProt:F6HGU2 | wikigene:100242162 | wikigene:LOC100242162 | MapMan:35.1 |
Description
No Description!
Coordinates
chr11:-:1155354..1156843
Molecular Weight (calculated)
47803.0 Da
IEP (calculated)
8.603
GRAVY (calculated)
-0.669
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGPLLGLST DSPVTSSLRT LPLSLSRLLF IYVHPKLYRE SREQLERMER VQQRRKTPSF SSSLLDSVLR SIDESSGERQ QLLMSKKQGG AEEEEIASVR
101: RAMMIEKWMR KQSGGSSVSS VVFNSGSSSS ESSCGGIFSS SEAETSSGGR SCFTPHRSKY VPVAASAGSE RSRKVAKLVE QRNSAPKLGE NHGGRGGGGG
201: GGSFLKTKSK ALKFYGDLKK VNQPISPGRR IANFLNSLFS SGNAKKAKMC SFETVDDMSS ERKVVKSVQE STCSSASSFS RSCLSKTPSS SRTKLKRSVR
301: FYPVSVIVDE DCRPCGHKCL YEDDPSLMPT LTAKNIPQTA WLKGELNEKN TSPANIADMR QIVRDYQKKI SHEFKLADLC HNEDDDDDDD DDDDAESYSS
401: SDLFELDHIA IGRYQEELPV YGTTYLGTNH SHRA
101: RAMMIEKWMR KQSGGSSVSS VVFNSGSSSS ESSCGGIFSS SEAETSSGGR SCFTPHRSKY VPVAASAGSE RSRKVAKLVE QRNSAPKLGE NHGGRGGGGG
201: GGSFLKTKSK ALKFYGDLKK VNQPISPGRR IANFLNSLFS SGNAKKAKMC SFETVDDMSS ERKVVKSVQE STCSSASSFS RSCLSKTPSS SRTKLKRSVR
301: FYPVSVIVDE DCRPCGHKCL YEDDPSLMPT LTAKNIPQTA WLKGELNEKN TSPANIADMR QIVRDYQKKI SHEFKLADLC HNEDDDDDDD DDDDAESYSS
401: SDLFELDHIA IGRYQEELPV YGTTYLGTNH SHRA
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
Arabidopsis Description
Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.