Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 44.04 | 47.16 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 31.79 | 33.22 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 29.47 | 31.23 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 24.17 | 24.25 |
| AT3G42800.1 | Thale cress | nucleus | 26.16 | 23.17 |
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 23.51 | 22.98 |
| KRH19263 | Soybean | nucleus | 27.81 | 21.65 |
| KRH02643 | Soybean | nucleus | 28.48 | 21.08 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 27.48 | 19.12 |
| CDY02474 | Canola | nucleus | 3.97 | 16.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P17670_001 | EnsemblPlants:GSMUA_Achr10T17670_001 | EnsemblPlantsGene:GSMUA_Achr10G17670_001 | ncoils:Coil | PANTHER:PTHR33541 | SEG:seg |
| UniParc:UPI000296514C | UniProt:M0RJ42 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G17670_001]
Coordinates
chr10:+:24787422..24788447
Molecular Weight (calculated)
32571.6 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.771
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MEERWARGRN RSGHQNPSFS STLLDAIYRS IDESDGGGAT HAPIIVPKRP PPLLRPPVDR RTAGAADERA ATRRRPFVPI STSSSSEKSS YGGFSSSSEP
101: DSAATRLRPI RTAGPPIHSA PPPPAAASFD RHEEDEKKKK KKTSSIRGRL RDMKSSRSAA PASPGARLAG FLGSLLSAVS GTPRRPTSTA SGCDDSACST
201: ASSHSRSCLS VYEADRAAET SSRRPSSAAM EARRRVEELL RGMEEEEEEE TSDSSSDLFE LENLTVIGMA GGAVHSDELP VYETTHLDTN RSFSQSQRFL
301: QI
101: DSAATRLRPI RTAGPPIHSA PPPPAAASFD RHEEDEKKKK KKTSSIRGRL RDMKSSRSAA PASPGARLAG FLGSLLSAVS GTPRRPTSTA SGCDDSACST
201: ASSHSRSCLS VYEADRAAET SSRRPSSAAM EARRRVEELL RGMEEEEEEE TSDSSSDLFE LENLTVIGMA GGAVHSDELP VYETTHLDTN RSFSQSQRFL
301: QI
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.