Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42800.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 75.75 | 73.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.9 | 31.91 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 29.9 | 31.14 |
| KRH19263 | Soybean | nucleus | 39.2 | 30.41 |
| KRH02643 | Soybean | nucleus | 40.2 | 29.66 |
| AT3G42800.1 | Thale cress | nucleus | 32.89 | 29.03 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 41.86 | 29.03 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 24.58 | 25.96 |
| GSMUA_Achr10P... | Banana | nucleus | 24.25 | 24.17 |
| PGSC0003DMT400006604 | Potato | nucleus | 21.26 | 15.92 |
| CDY02474 | Canola | nucleus | 3.65 | 15.49 |
| PGSC0003DMT400055964 | Potato | nucleus | 19.6 | 15.25 |
| PGSC0003DMT400030330 | Potato | nucleus | 9.3 | 13.21 |
| PGSC0003DMT400030328 | Potato | nucleus | 5.98 | 10.47 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050356 | EnsemblPlantsGene:PGSC0003DMG400019573 | EntrezGene:102599331 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF7 | PGSC:PGSC0003DMG400019573 |
| RefSeq:XP_006342356.1 | RefSeq:XP_015162012.1 | SEG:seg | UniParc:UPI000294ADEE | UniProt:M1BQ61 | MapMan:35.1 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019573]
Coordinates
chr7:+:37678451..37679909
Molecular Weight (calculated)
34264.9 Da
IEP (calculated)
9.324
GRAVY (calculated)
-0.986
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSWEKPIIR PHQRRKTPSF SSSLLEAIYH SIDESKEEEK HEEVPNKKSN NEEEIVSLRR AILIEKWMES YKYTQSSGHF SSDSSSSTES SMFSSSETES
101: RSINTLPRPT RQVRRSDKIV TFSTDTDTTP KCEGGGRFMR TKSRALKMVK QPISPGGKIA NFLNSIFNSR NMKKNHHEEW RKSRSVNDST TSSCLNKTPS
201: STSRSNKSKR SVRFCPDTVI VDEHCGHKSI YKNEEPKHQY RGFYKDGDED EDDGRSCASS DLFELENIGM IGHVHATRDG LPVYGTTSFK MNQAIARGLV
301: M
101: RSINTLPRPT RQVRRSDKIV TFSTDTDTTP KCEGGGRFMR TKSRALKMVK QPISPGGKIA NFLNSIFNSR NMKKNHHEEW RKSRSVNDST TSSCLNKTPS
201: STSRSNKSKR SVRFCPDTVI VDEHCGHKSI YKNEEPKHQY RGFYKDGDED EDDGRSCASS DLFELENIGM IGHVHATRDG LPVYGTTSFK MNQAIARGLV
301: M
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.