Factsheet for PGSC0003DMT400055964

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g062180.1.1	Tomato	nucleus	79.33	79.33
KRH52238	Soybean	nucleus	40.57	40.78
KRH61567	Soybean	mitochondrion, nucleus	41.34	40.61
PGSC0003DMT400006604	Potato	nucleus	40.57	39.05
VIT_04s0008g01700.t01	Wine grape	nucleus	40.31	36.71
PGSC0003DMT400030328	Potato	nucleus	15.76	35.47
KRH05403	Soybean	nucleus	36.18	33.33
KRH15613	Soybean	nucleus	34.37	32.84
CDX97165	Canola	cytosol, nucleus, peroxisome	28.42	32.84
CDX91176	Canola	nucleus, plastid	7.75	31.58
Bra008918.1-P	Field mustard	nucleus	27.39	31.18
PGSC0003DMT400030330	Potato	nucleus	16.8	30.66
CDX69710	Canola	nucleus	26.61	30.38
CDX91175	Canola	plastid	11.37	28.76
CDX78464	Canola	nucleus	24.29	28.75
AT5G12050.1	Thale cress	nucleus	26.87	28.73
Bra006139.1-P	Field mustard	nucleus	24.03	28.7
Bra023361.1-P	Field mustard	nucleus	24.81	28.66
CDX85703	Canola	plastid	17.83	26.24
CDX70442	Canola	nucleus	24.03	23.6
PGSC0003DMT400050356	Potato	mitochondrion, nucleus	15.25	19.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400055964	EnsemblPlantsGene:PGSC0003DMG400021740	PANTHER:PTHR33541	PANTHER:PTHR33541:SF2	PGSC:PGSC0003DMG400021740	SEG:seg
UniParc:UPI000296FACF	UniProt:M1BYT1	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021740]

Coordinates

chr8:-:34252756..34254124

Molecular Weight (calculated)

43687.5 Da

IEP (calculated)

9.348

GRAVY (calculated)

-0.934

Length

387 amino acids

Sequence
(BLAST)

001: MEKDKLSRRH HKNPSFSSSL LDEIYRSIDG YDQRREDFKL PKLETRKQSS SANIGLKPKG VANIYNKKKS IEDEEIASFR RACLIEKWME KKVKDKARSE
101: LDSINYDSLF FSSTSSESNS GTLSASSSEP DSFYSEKSSS SSTTTTCFAA SRTRSIRRAS VSPRRGTKLY SFDNQQANKN EESNLIKSKS TALKKVKQPI
201: SPGGRLTNFL TSIFNNKSKN LKDPNGGNRG DFHEVDDRNS KSSSICSSFS RSCLSKTPPK FSQTAVKRTV RFNPVSVIVD EDCRPCGHKS IYDHDSDNLR
301: RPKSQGNAEK NRKFEVTKVD SLKSYKNDYI VDYADEDDDD AASCSSSDLF EIDHLAFFGN KRFCDELPVY ETTYVDTNRG IASGFIH

Best Arabidopsis Sequence Match ( AT3G13980.1 )
(BLAST)

001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV

Arabidopsis Description

Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.