CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52238	Soybean	nucleus	71.07	72.73
KRH05403	Soybean	nucleus	45.18	42.38
KRH15613	Soybean	nucleus	42.89	41.73
Solyc08g062180.1.1	Tomato	nucleus	40.61	41.34
PGSC0003DMT400055964	Potato	nucleus	40.61	41.34
VIT_04s0008g01700.t01	Wine grape	nucleus	44.42	41.18
KRH47572	Soybean	nucleus	43.4	39.77
KRH06149	Soybean	nucleus	43.15	39.44
CDX97165	Canola	cytosol, nucleus, peroxisome	30.71	36.12
CDX69710	Canola	nucleus	29.7	34.51
Bra008918.1-P	Field mustard	nucleus	29.7	34.41
CDX91176	Canola	nucleus, plastid	8.12	33.68
Bra006139.1-P	Field mustard	nucleus	27.66	33.64
Bra023361.1-P	Field mustard	nucleus	28.43	33.43
CDX78464	Canola	nucleus	27.66	33.33
CDX91175	Canola	plastid	12.69	32.68
AT5G12050.1	Thale cress	nucleus	29.44	32.04
CDX85703	Canola	plastid	20.81	31.18
CDX70442	Canola	nucleus	28.93	28.93
KRH19263	Soybean	nucleus	14.21	14.43
KRH02643	Soybean	nucleus	14.21	13.73

Protein Annotations

EMBL:ACUP02002171	EnsemblPlants:KRH61567	EnsemblPlantsGene:GLYMA_04G055100	EntrezGene:100802581	PANTHER:PTHR33541	PANTHER:PTHR33541:SF2
ProteinID:KRH61567	ProteinID:KRH61567.1	SEG:seg	UniParc:UPI0002339694	UniProt:K7KI94	MapMan:35.1

Description

hypothetical protein

Coordinates

chr4:+:4444644..4446283

Molecular Weight (calculated)

44428.5 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.861

Length

394 amino acids

Sequence
(BLAST)

001: MYTTKREQQR LRFQNHAKKP SFSSILLDQI YRSIDEGNDM KLYNETMAKQ QNRVFVEEEE EEEEITAASI RRACLLDKWK ESEKAGSQWK TQTEGKSRWH
101: HHHNHEHDQE VMFFSSTSSS SDSSSGLLSS SDTESLYGMR SKSRVSCFAP SRPKPVVTSA SNEVGLIKSE SRALKIYNNL KKVKQPISPG GKLSNFLNSL
201: FATGGSVKKT KTYDDDAKAS TKSGQDSTCS SASSFSRSCL SKASTSSKDK LRDGVKRTVR FYPVSVIVGE DSRACGHKCL YEEDTRVTEV SVPTAWKIGR
301: KKNQEDEELR VVDRSRRVEE AAREFLKEYH RSQKKSDFTN LDVEDDGDAS SCSSSDLFEL DHLAVMGNDR YGDELPVYET TYVSTNRAIA NGLI

Best Arabidopsis Sequence Match ( AT1G54200.1 )
(BLAST)

001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR

Arabidopsis Description

Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.