Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02474 | Canola | nucleus | 18.95 | 40.85 |
| CDX85703 | Canola | plastid | 46.41 | 27.0 |
| CDX69710 | Canola | nucleus | 52.94 | 23.89 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 50.33 | 22.99 |
| CDX78464 | Canola | nucleus | 49.02 | 22.94 |
| CDX70442 | Canola | nucleus | 47.71 | 18.53 |
| CDY10614 | Canola | nucleus | 35.29 | 17.82 |
| CDY33081 | Canola | nucleus | 32.68 | 15.67 |
| CDX97534 | Canola | nucleus | 32.03 | 15.12 |
| CDY24062 | Canola | nucleus | 32.03 | 14.94 |
| KRH52238 | Soybean | nucleus | 35.95 | 14.29 |
| CDY33260 | Canola | nucleus | 32.68 | 14.2 |
| CDY55213 | Canola | nucleus | 27.45 | 13.82 |
| VIT_04s0008g01700.t01 | Wine grape | nucleus | 37.25 | 13.41 |
| CDY39086 | Canola | nucleus | 30.72 | 13.35 |
| KRH61567 | Soybean | mitochondrion, nucleus | 32.68 | 12.69 |
| Solyc08g062180.1.1 | Tomato | nucleus | 30.72 | 12.14 |
| KRH15613 | Soybean | nucleus | 31.37 | 11.85 |
| PGSC0003DMT400055964 | Potato | nucleus | 28.76 | 11.37 |
| KRH05403 | Soybean | nucleus | 30.72 | 11.19 |
| CDX91176 | Canola | nucleus, plastid | 5.88 | 9.47 |
Protein Annotations
| EnsemblPlants:CDX91175 | EnsemblPlantsGene:GSBRNA2T00151978001 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF2 | ProteinID:CDX91175 | ProteinID:CDX91175.1 |
| SEG:seg | UniParc:UPI0004EE9DA9 | MapMan:35.2 | : | : | : |
Description
BnaC02g04220D
Coordinates
chrLK031865:-:1234306..1234943
Molecular Weight (calculated)
17479.9 Da
IEP (calculated)
6.148
GRAVY (calculated)
-0.288
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIGRMQEPE GPRVSSKLQL RLVYGSLTSS TLCSATTVLP NNHLLRLRVI RGRRAMTLLN RRIIIIHLPR VLLQLLPSQV EEIAREFLRD YHKNHENGLV
101: KSNDFEDYED VDDDVASDSS SDLFELDLAG SHHHNLYGDE LPVYETTFAG LIL
101: KSNDFEDYED VDDDVASDSS SDLFELDLAG SHHHNLYGDE LPVYETTFAG LIL
001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
Arabidopsis Description
Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.