CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39086	Canola	nucleus	95.17	95.17
Bra021523.1-P	Field mustard	nucleus	92.05	92.84
CDY02474	Canola	nucleus	15.06	74.65
CDX97534	Canola	nucleus	63.64	69.14
AT3G13980.1	Thale cress	nucleus	65.06	64.15
CDY55213	Canola	nucleus	53.98	62.5
CDY33081	Canola	nucleus	53.69	59.25
CDY24062	Canola	nucleus	53.12	57.01
CDY10614	Canola	nucleus	46.88	54.46
VIT_09s0002g01520.t01	Wine grape	nucleus	41.19	48.49
PGSC0003DMT400030328	Potato	nucleus	21.31	43.6
Solyc03g121970.1.1	Tomato	nucleus	46.59	40.2
KRH06149	Soybean	nucleus	49.15	40.14
KRH47572	Soybean	nucleus	48.01	39.3
PGSC0003DMT400030330	Potato	nucleus	22.73	37.74
CDX91176	Canola	nucleus, plastid	9.94	36.84
CDX78464	Canola	nucleus	31.25	33.64
CDX97165	Canola	cytosol, nucleus, peroxisome	31.82	33.43
CDX91175	Canola	plastid	14.2	32.68
CDX69710	Canola	nucleus	31.25	32.45
CDX85703	Canola	plastid	21.88	29.28
CDX70442	Canola	nucleus	31.53	28.17

Protein Annotations

EnsemblPlants:CDY33260	EnsemblPlantsGene:GSBRNA2T00054027001	ncoils:Coil	PANTHER:PTHR33541	PANTHER:PTHR33541:SF5	ProteinID:CDY33260
ProteinID:CDY33260.1	SEG:seg	UniParc:UPI0004EE9AD9	UniProt:A0A078H3N9	MapMan:35.1	:

Description

BnaC01g37330DBnaC01g37330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3N9]

Coordinates

chrLK032309:+:419138..420196

Molecular Weight (calculated)

38947.1 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.761

Length

352 amino acids

Sequence
(BLAST)

001: METWEKPSSR GHHRNPSFSS TLLDHIYRSI DDNSAQLEPI RKKKLLHEDL DTSPDKLVFH RRSIAADFER SRRTTTTTTA ADSVLLRYSN STSSDSSGLS
101: SSESDSFYGR SKSSASPPQP KPIRTSAASS GERPNTKQEL GGFLRTKSKA LKIYTDLKKA KQPISPGGRL ATFLNSLFTN VSTNPKKPKK NTTSISVLSE
201: TQSSSTTCSS ASSFSRSCLS KTPSSSGKSK RSVRFCPVNV ILDEDSSVYI PCGNNNNDTK RYRQVMEEEN RRVIEAAKDL IRKYQKNKDL LAVTTCDDVE
301: DDDDAASCAS SDLFELDNLS AIGIERYQEE LPVYETTHLD NTNRAVATSL IV

Best Arabidopsis Sequence Match ( AT3G13980.1 )
(BLAST)

001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV

Arabidopsis Description

Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.