Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78464 | Canola | nucleus | 78.17 | 94.19 |
| Bra006139.1-P | Field mustard | nucleus | 75.89 | 92.28 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 57.61 | 67.76 |
| CDX69710 | Canola | nucleus | 56.35 | 65.49 |
| AT5G12050.1 | Thale cress | nucleus | 55.84 | 60.77 |
| CDX91176 | Canola | nucleus, plastid | 13.71 | 56.84 |
| CDX91175 | Canola | plastid | 18.53 | 47.71 |
| CDX85703 | Canola | plastid | 30.71 | 46.01 |
| CDY02474 | Canola | nucleus | 7.61 | 42.25 |
| CDY33081 | Canola | nucleus | 26.65 | 32.92 |
| CDX97534 | Canola | nucleus | 26.14 | 31.79 |
| CDY10614 | Canola | nucleus | 24.37 | 31.68 |
| CDY55213 | Canola | nucleus | 24.37 | 31.58 |
| CDY33260 | Canola | nucleus | 28.17 | 31.53 |
| CDY39086 | Canola | nucleus | 27.92 | 31.25 |
| CDY24062 | Canola | nucleus | 25.63 | 30.79 |
| KRH52238 | Soybean | nucleus | 29.19 | 29.87 |
| KRH61567 | Soybean | mitochondrion, nucleus | 28.93 | 28.93 |
| VIT_04s0008g01700.t01 | Wine grape | nucleus | 30.46 | 28.24 |
| KRH05403 | Soybean | nucleus | 28.17 | 26.43 |
| Solyc08g062180.1.1 | Tomato | nucleus | 25.63 | 26.1 |
| KRH15613 | Soybean | nucleus | 26.65 | 25.93 |
| PGSC0003DMT400055964 | Potato | nucleus | 23.6 | 24.03 |
Protein Annotations
| EnsemblPlants:CDX70442 | EnsemblPlantsGene:GSBRNA2T00140257001 | ncoils:Coil | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF2 | ProteinID:CDX70442 |
| ProteinID:CDX70442.1 | SEG:seg | UniParc:UPI0004EEB054 | MapMan:35.1 | : | : |
Description
BnaC03g05260D
Coordinates
chrLK031791:+:431425..432814
Molecular Weight (calculated)
44982.3 Da
IEP (calculated)
9.462
GRAVY (calculated)
-0.796
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTALAWSIW LSIREEHAPR SPVIYKSSPC SLSFVVFLYN IRQRRRKTPK QLRRYLFLLL SSPSEQIMHR SEAQSRNPSF SSTLLDEIYN SIDPKTKKTQ
101: PFVGSVKKQS ISVTRSVPDR KLHQDRFFGS ASSSSDSNSS IFSSSDTEPS HGTKKITSSR PLCFGPSKTK QSKTEDKALF HQNRATRVFH DYDYASSNQK
201: KLKTPSSPGV RIVNFINALF SKQSTAVKRY PRNTSYEETA FSRKPTDYYY PSTTCSSASS FSRSCLNKRS EKSSDSTKPS VRFSPVNVIV PEIEEEDYLS
301: SGYVRKSVKK NVEDGVRRSV EEIAREFLRD YHKKHENSLV KNNNDLEDYE DEDDDVGSDS SSDLFELDLV GTHHHNLYQD ELPVYETTFA GLIL
101: PFVGSVKKQS ISVTRSVPDR KLHQDRFFGS ASSSSDSNSS IFSSSDTEPS HGTKKITSSR PLCFGPSKTK QSKTEDKALF HQNRATRVFH DYDYASSNQK
201: KLKTPSSPGV RIVNFINALF SKQSTAVKRY PRNTSYEETA FSRKPTDYYY PSTTCSSASS FSRSCLNKRS EKSSDSTKPS VRFSPVNVIV PEIEEEDYLS
301: SGYVRKSVKK NVEDGVRRSV EEIAREFLRD YHKKHENSLV KNNNDLEDYE DEDDDVGSDS SSDLFELDLV GTHHHNLYQD ELPVYETTFA GLIL
001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
Arabidopsis Description
Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.