Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02474 | Canola | nucleus | 19.12 | 85.92 |
| CDY24062 | Canola | nucleus | 80.88 | 78.66 |
| Bra037972.1-P | Field mustard | nucleus | 69.28 | 77.27 |
| CDY10614 | Canola | nucleus | 66.77 | 70.3 |
| AT1G54200.1 | Thale cress | nucleus | 68.65 | 59.84 |
| CDY33260 | Canola | nucleus | 59.25 | 53.69 |
| CDY39086 | Canola | nucleus | 58.93 | 53.41 |
| CDX97534 | Canola | nucleus | 54.23 | 53.4 |
| CDY55213 | Canola | nucleus | 49.22 | 51.64 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 42.63 | 45.48 |
| PGSC0003DMT400030328 | Potato | nucleus | 21.0 | 38.95 |
| KRH06149 | Soybean | nucleus | 52.35 | 38.75 |
| Solyc03g121970.1.1 | Tomato | nucleus | 49.53 | 38.73 |
| KRH47572 | Soybean | nucleus | 51.72 | 38.37 |
| CDX91176 | Canola | nucleus, plastid | 10.34 | 34.74 |
| PGSC0003DMT400030330 | Potato | nucleus | 22.26 | 33.49 |
| CDX91175 | Canola | plastid | 15.67 | 32.68 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 33.86 | 32.24 |
| CDX78464 | Canola | nucleus | 32.92 | 32.11 |
| CDX69710 | Canola | nucleus | 32.92 | 30.97 |
| CDX85703 | Canola | plastid | 23.2 | 28.14 |
| CDX70442 | Canola | nucleus | 32.92 | 26.65 |
Protein Annotations
| EnsemblPlants:CDY33081 | EnsemblPlantsGene:GSBRNA2T00053724001 | ncoils:Coil | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 | ProteinID:CDY33081 |
| ProteinID:CDY33081.1 | SEG:seg | UniParc:UPI0004EECD2E | UniProt:A0A078H5F6 | MapMan:35.1 | : |
Description
BnaC06g06980DBnaC06g06980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5F6]
Coordinates
chrLK032305:-:323847..325068
Molecular Weight (calculated)
36416.2 Da
IEP (calculated)
10.186
GRAVY (calculated)
-0.955
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWDNNTID HQYRRRDHRH PSFSSTLLDQ IYRSTDDSSD KILLNRRKTA DDFAVNRRKT AEDFVRSRNP NTVTVEPVFF KHSSSSSSDS SGFSSSESDS
101: FYRRTRSSRS LPEIHHHPKP IRIAVERPNN NNNNKVKSKA LKMYSDLKKV KQPISPGGRL ATFLNSLFTG NTKKPNKTVS TATSSHTTCS SASSFSRSCL
201: SKTTSSSEKS KRSVRFCPVN VILDENSARH HRSLDTRESR VMEENRRVIE AAKELIRTYQ KNKNVVNISV EEEDDDAASC ASSDLFELDN LSSIGIERYR
301: EELPVYETTR LNTNRIISR
101: FYRRTRSSRS LPEIHHHPKP IRIAVERPNN NNNNKVKSKA LKMYSDLKKV KQPISPGGRL ATFLNSLFTG NTKKPNKTVS TATSSHTTCS SASSFSRSCL
201: SKTTSSSEKS KRSVRFCPVN VILDENSARH HRSLDTRESR VMEENRRVIE AAKELIRTYQ KNKNVVNISV EEEDDDAASC ASSDLFELDN LSSIGIERYR
301: EELPVYETTR LNTNRIISR
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
Arabidopsis Description
Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.