Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030328 | Potato | nucleus | 33.49 | 41.28 |
| Bra037972.1-P | Field mustard | nucleus | 33.96 | 25.17 |
| CDY10614 | Canola | nucleus | 33.49 | 23.43 |
| Bra030898.1-P | Field mustard | nucleus | 33.49 | 23.2 |
| CDY39086 | Canola | nucleus | 38.21 | 23.01 |
| CDY33260 | Canola | nucleus | 37.74 | 22.73 |
| Bra021523.1-P | Field mustard | nucleus | 36.79 | 22.35 |
| CDY33081 | Canola | nucleus | 33.49 | 22.26 |
| CDY24062 | Canola | nucleus | 34.43 | 22.26 |
| PGSC0003DMT400006604 | Potato | nucleus | 40.57 | 21.39 |
| AT3G13980.1 | Thale cress | nucleus | 35.85 | 21.29 |
| CDX97534 | Canola | nucleus | 32.08 | 20.99 |
| Bra027381.1-P | Field mustard | nucleus | 34.91 | 20.22 |
| AT1G54200.1 | Thale cress | nucleus | 34.91 | 20.22 |
| CDY55213 | Canola | nucleus | 28.77 | 20.07 |
| PGSC0003DMT400055964 | Potato | nucleus | 30.66 | 16.8 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 13.21 | 9.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400030330 | EnsemblPlantsGene:PGSC0003DMG400011608 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF7 | PGSC:PGSC0003DMG400011608 | SEG:seg |
| UniParc:UPI0002955F4E | UniProt:M1AU32 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011608]
Coordinates
chr12:+:52539808..52541000
Molecular Weight (calculated)
24351.5 Da
IEP (calculated)
8.689
GRAVY (calculated)
-0.982
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCSLPLFVK PYYNRPIFHS IDHSGQEKKS RNFNSNSDSF RYGLNNRPKP IRTCISTSQE KFDHKHQYPK DLNFYDSSLS KEKFKHEEDD FKKTKSRALK
101: KIKQPISPGS RLSNFLSSLF TNGKKVKISS NDEDKKSKST CSSCGHKKLD MDQQNVEAIK GINRNYVHED HLKSHKNIED EDDDYDEGAS CASSDLFEID
201: IFSSIGLMGL PL
101: KIKQPISPGS RLSNFLSSLF TNGKKVKISS NDEDKKSKST CSSCGHKKLD MDQQNVEAIK GINRNYVHED HLKSHKNIED EDDDYDEGAS CASSDLFEID
201: IFSSIGLMGL PL
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.