Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97534 | Canola | nucleus | 66.78 | 62.65 |
| CDY39086 | Canola | nucleus | 64.14 | 55.4 |
| CDY33260 | Canola | nucleus | 62.5 | 53.98 |
| CDY02474 | Canola | nucleus | 12.5 | 53.52 |
| AT3G13980.1 | Thale cress | nucleus | 60.53 | 51.54 |
| CDY33081 | Canola | nucleus | 51.64 | 49.22 |
| CDY10614 | Canola | nucleus | 48.36 | 48.51 |
| CDY24062 | Canola | nucleus | 51.64 | 47.87 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 45.72 | 46.49 |
| CDX91176 | Canola | nucleus, plastid | 12.5 | 40.0 |
| PGSC0003DMT400030328 | Potato | nucleus | 21.05 | 37.21 |
| Solyc03g121970.1.1 | Tomato | nucleus | 46.05 | 34.31 |
| KRH06149 | Soybean | nucleus | 48.36 | 34.11 |
| KRH47572 | Soybean | nucleus | 47.7 | 33.72 |
| CDX78464 | Canola | nucleus | 31.58 | 29.36 |
| PGSC0003DMT400030330 | Potato | nucleus | 20.07 | 28.77 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 31.25 | 28.36 |
| CDX85703 | Canola | plastid | 24.01 | 27.76 |
| CDX69710 | Canola | nucleus | 30.92 | 27.73 |
| CDX91175 | Canola | plastid | 13.82 | 27.45 |
| CDX70442 | Canola | nucleus | 31.58 | 24.37 |
Protein Annotations
| EnsemblPlants:CDY55213 | EnsemblPlantsGene:GSBRNA2T00016516001 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 | ProteinID:CDY55213 | ProteinID:CDY55213.1 |
| SEG:seg | UniParc:UPI0004EE0204 | UniProt:A0A078J0J7 | MapMan:35.1 | : | : |
Description
BnaCnng28490DBnaCnng28490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0J7]
Coordinates
chrLK033383:-:53827..54954
Molecular Weight (calculated)
34173.7 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.738
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: METWEKPRVS SSRDHYRQPS FSSTLLDQIY RSIDDSPPLE STRRKKQQHR NIALQDTSAS DKLVFHRCSI AADYERSRRT TTLADSVFLR YSNSSSSDSS
101: GFSSSELDSF YLRSKPSASP PRTHQPKPIR TSVVEKFDHS IYTDLKKVKQ PLSPGGRLAT FLNSLFTNAS SNHKKLKKIN TTSSSNTTCS STSSFSRSCL
201: SKTPSSSGKS KRSVRFLTSC METTSTATSW RRRIAALSKR LRILLGQDDE DDIDDDAASY ASSDLFELEN LSAIGIERYR EELPVYETTR LDNTNRAIAT
301: SLIV
101: GFSSSELDSF YLRSKPSASP PRTHQPKPIR TSVVEKFDHS IYTDLKKVKQ PLSPGGRLAT FLNSLFTNAS SNHKKLKKIN TTSSSNTTCS STSSFSRSCL
201: SKTPSSSGKS KRSVRFLTSC METTSTATSW RRRIAALSKR LRILLGQDDE DDIDDDAASY ASSDLFELEN LSAIGIERYR EELPVYETTR LDNTNRAIAT
301: SLIV
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.