CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021523.1-P	Field mustard	nucleus	95.74	96.56
CDY33260	Canola	nucleus	95.17	95.17
CDY02474	Canola	nucleus	15.34	76.06
CDX97534	Canola	nucleus	64.49	70.06
AT3G13980.1	Thale cress	nucleus	66.48	65.55
CDY55213	Canola	nucleus	55.4	64.14
CDY33081	Canola	nucleus	53.41	58.93
CDY24062	Canola	nucleus	53.41	57.32
CDY10614	Canola	nucleus	46.88	54.46
VIT_09s0002g01520.t01	Wine grape	nucleus	41.76	49.16
PGSC0003DMT400030328	Potato	nucleus	21.31	43.6
KRH06149	Soybean	nucleus	49.15	40.14
Solyc03g121970.1.1	Tomato	nucleus	46.02	39.71
CDX91176	Canola	nucleus, plastid	10.51	38.95
KRH47572	Soybean	nucleus	47.44	38.84
PGSC0003DMT400030330	Potato	nucleus	23.01	38.21
CDX78464	Canola	nucleus	31.53	33.95
CDX97165	Canola	cytosol, nucleus, peroxisome	31.25	32.84
CDX69710	Canola	nucleus	31.53	32.74
CDX91175	Canola	plastid	13.35	30.72
CDX85703	Canola	plastid	21.31	28.52
CDX70442	Canola	nucleus	31.25	27.92

Protein Annotations

EnsemblPlants:CDY39086	EnsemblPlantsGene:GSBRNA2T00067239001	PANTHER:PTHR33541	PANTHER:PTHR33541:SF5	ProteinID:CDY39086	ProteinID:CDY39086.1
SEG:seg	UniParc:UPI0004EE4FA2	UniProt:A0A078HNC9	MapMan:35.1	:	:

Description

BnaA01g29700DBnaA01g29700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNC9]

Coordinates

chrLK032440:-:67322..68380

Molecular Weight (calculated)

38879.9 Da

IEP (calculated)

9.126

GRAVY (calculated)

-0.791

Length

352 amino acids

Sequence
(BLAST)

001: METWEKPSSR GHHRNPSFSS TLLDHIYRSI DDNSPPLEPT RKKKPLHEDL DTSPDKLVFH RRSIAADFER SRRTTTTAAA ADSVFLRYSN STSSDSSGLS
101: SSESDSFYGR SKSSASPPQP KPIRTSAVSS GERTNTKQEL GGFLRTKSKA LKIYTDLKKA KQPISPGGRL ATFLNSLFTN ASTNPKKPKK NSTSISVLSE
201: SQSSSTTCSS ASSFSRSCLS KTPSSSGKSK RSVRFCPVNV ILDEDSSVYI PCGNNNNDTK RYRQVMEEEN RRVIEAAKDL IRTYQKNKDL LAVTTCHDVE
301: DDDDAASCAS SDLFELENLS AIGIERYQEE LPVYETTRLD NTNRAVATSL TV

Best Arabidopsis Sequence Match ( AT3G13980.1 )
(BLAST)

001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV

Arabidopsis Description

Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.