CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06149	Soybean	nucleus	89.3	89.1
VIT_09s0002g01520.t01	Wine grape	nucleus	42.09	60.54
CDY33081	Canola	nucleus	38.37	51.72
PGSC0003DMT400006604	Potato	nucleus	46.74	50.0
Bra037972.1-P	Field mustard	nucleus	33.26	50.0
CDX97534	Canola	nucleus	37.44	49.69
Bra030898.1-P	Field mustard	nucleus	34.88	49.02
CDY24062	Canola	nucleus	36.74	48.17
CDY33260	Canola	nucleus	39.3	48.01
AT3G13980.1	Thale cress	nucleus	39.77	47.9
CDY10614	Canola	nucleus	33.72	47.85
CDY55213	Canola	nucleus	33.72	47.7
Bra021523.1-P	Field mustard	nucleus	38.6	47.56
Solyc03g121970.1.1	Tomato	nucleus	45.12	47.55
Bra027381.1-P	Field mustard	nucleus	40.47	47.54
CDY39086	Canola	nucleus	38.84	47.44
AT1G54200.1	Thale cress	nucleus	39.53	46.45
KRH52238	Soybean	nucleus	39.53	44.16
KRH61567	Soybean	mitochondrion, nucleus	39.77	43.4
KRH05403	Soybean	nucleus	34.19	35.0
KRH15613	Soybean	nucleus	32.56	34.57
KRH19263	Soybean	nucleus	16.28	18.04
KRH02643	Soybean	nucleus	16.98	17.89

Protein Annotations

EMBL:ACUP02004154	EnsemblPlants:KRH47572	EnsemblPlantsGene:GLYMA_07G036700	EntrezGene:100801760	PANTHER:PTHR33541	PANTHER:PTHR33541:SF5
ProteinID:KRH47572	ProteinID:KRH47572.1	SEG:seg	UniParc:UPI00023C6ED8	UniProt:K7KZI0	MapMan:35.1

Description

hypothetical protein

Coordinates

chr7:+:3003797..3005089

Molecular Weight (calculated)

48588.1 Da

IEP (calculated)

8.277

GRAVY (calculated)

-1.021

Length

430 amino acids

Sequence
(BLAST)

001: MDKWDNKPSR KQHHRENPSF SSTLLDVIYR SIDEDPTDEK EEAQLIFYRE TMRNQKQSNC FREEKPEAEK HNSRRARKVE NWMEKKANEK VVMGRNSLTE
101: FERRTRSNSI SNTLSMYSSS TSSESSSVGG FSSSESESFY GVQRPKPIKT SVSDKTKTKT TFDASLHSHN FRSHSSQSQK PKHENGSGKT KSKALKILYG
201: ELKKAKQPIS PGAKLASFLN SLFTSSGNAK KAKVSTTTTT TTTSTYRPVL IPVATDRTAD TKSAAQQQQQ PGSTCSSASS FSRSCLSKTP SSRSGAKRSV
301: RFCPVSVIVD EDCRPCGHKN LHEGEESNGK NRSEELRLHV MQESRRVEEL ARDLLKNYQK KSEVEFDDVM HYEDEEEEED DDDVASCSSS DLFELDNLSA
401: IGIERYREEL PVYETTHFNT NRAIANGFIL

Best Arabidopsis Sequence Match ( AT3G13980.1 )
(BLAST)

001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV

Arabidopsis Description

Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.