CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47572	Soybean	nucleus	89.1	89.3
VIT_09s0002g01520.t01	Wine grape	nucleus	42.69	61.54
CDY33081	Canola	nucleus	38.75	52.35
Bra037972.1-P	Field mustard	nucleus	34.11	51.4
PGSC0003DMT400006604	Potato	nucleus	47.8	51.24
Bra030898.1-P	Field mustard	nucleus	36.19	50.98
CDX97534	Canola	nucleus	37.82	50.31
AT3G13980.1	Thale cress	nucleus	41.07	49.58
Solyc03g121970.1.1	Tomato	nucleus	46.87	49.51
CDY24062	Canola	nucleus	37.59	49.39
CDY10614	Canola	nucleus	34.57	49.17
CDY33260	Canola	nucleus	40.14	49.15
CDY39086	Canola	nucleus	40.14	49.15
Bra021523.1-P	Field mustard	nucleus	39.68	49.0
Bra027381.1-P	Field mustard	nucleus	41.07	48.36
CDY55213	Canola	nucleus	34.11	48.36
AT1G54200.1	Thale cress	nucleus	39.44	46.45
KRH52238	Soybean	nucleus	40.37	45.19
KRH61567	Soybean	mitochondrion, nucleus	39.44	43.15
KRH05403	Soybean	nucleus	34.8	35.71
KRH15613	Soybean	nucleus	32.71	34.81
KRH19263	Soybean	nucleus	16.47	18.3
KRH02643	Soybean	nucleus	16.94	17.89

Protein Annotations

EMBL:ACUP02009816	EnsemblPlants:KRH06149	EnsemblPlantsGene:GLYMA_16G006100	EntrezGene:100798956	PANTHER:PTHR33541	PANTHER:PTHR33541:SF5
ProteinID:KRH06149	ProteinID:KRH06149.1	SEG:seg	UniParc:UPI00023D7EA7	UniProt:I1MJY9	MapMan:35.1

Description

hypothetical protein

Coordinates

chr16:+:478774..481008

Molecular Weight (calculated)

48829.6 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.961

Length

431 amino acids

Sequence
(BLAST)

001: MDKWDNKPSR KQHHRENPSF SSTLLDVIYR SIDEDPTEEK EEAQLIFYRE TMRKQKQGNC FREEKPEAEK HNSRRARKVE NWMEKRASEK VLMGRNSLTE
101: FERRTRSNSI SNTLSMYSSS TSSESSSVGG FSSSESESFY YGVQRPKPIK TSVSDKTKTK TNFDASLHSH NFRSHSSQSQ KPKHENGFGK TKSKALKILY
201: GELKKAKQPI SPGAKLASFL NSLFTSTGNA KKAKVSTTTT STYRPVLIPI ATDRVADTKS VSAAQQQPGS TCSSASSFSR SCLSKTPSSR SGAKRSVRFC
301: PVSVIVDEDC RPCGHKNLHE GEESLVDSRG KNRSEELRLH VMQESRRVEE LARDLLKNYQ KKSEVEFDDV MHYEDEEEEE DDDDVASCAS SDLFELDNLS
401: AIGIERYREE LPVYETTHFN TNRAIANGFI L

Best Arabidopsis Sequence Match ( AT3G13980.1 )
(BLAST)

001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV

Arabidopsis Description

Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.