Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24062 | Canola | nucleus | 86.36 | 75.3 |
| CDY33081 | Canola | nucleus | 77.27 | 69.28 |
| Bra030898.1-P | Field mustard | nucleus | 65.73 | 61.44 |
| AT1G54200.1 | Thale cress | nucleus | 66.43 | 51.91 |
| Bra021523.1-P | Field mustard | nucleus | 58.39 | 47.85 |
| Bra027381.1-P | Field mustard | nucleus | 59.09 | 46.17 |
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 43.36 | 41.47 |
| PGSC0003DMT400030328 | Potato | nucleus | 23.78 | 39.53 |
| Solyc03g121970.1.1 | Tomato | nucleus | 52.1 | 36.52 |
| KRH06149 | Soybean | nucleus | 51.4 | 34.11 |
| PGSC0003DMT400030330 | Potato | nucleus | 25.17 | 33.96 |
| KRH47572 | Soybean | nucleus | 50.0 | 33.26 |
| Bra023361.1-P | Field mustard | nucleus | 33.57 | 28.66 |
| Bra008918.1-P | Field mustard | nucleus | 32.87 | 27.65 |
| Bra006139.1-P | Field mustard | nucleus | 30.42 | 26.85 |
Protein Annotations
Description
AT1G54200 (E=6e-027) | unknown protein
Coordinates
chrA06:-:347487..348347
Molecular Weight (calculated)
32473.9 Da
IEP (calculated)
10.059
GRAVY (calculated)
-0.936
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKKQNRAAS LDENRVCLEK ILLNRRKTAD DFAVNRRKTA EINTVEPVFF KHSSSSSSDS SGFSSSESDS FYKRTRSSRS PPAIHHHPKP IRTAVERLER
101: PNNKVKSKAL KMYSDLKKVK QPISPGGRLA TFLNSLFTGN TKKPNKTVST ATSSHTTCSS ASSFSRSCLS KTTSSSEKSK RSVRFCPVNV ILDEDSKQRE
201: SIRHHQSRVM EENRRVIEAA KELIRTYREN KDVEEEDDDD DDDAASCASS DLFELDNLSS IGIERYREEL PVYETTRLTT NRIISR
101: PNNKVKSKAL KMYSDLKKVK QPISPGGRLA TFLNSLFTGN TKKPNKTVST ATSSHTTCSS ASSFSRSCLS KTTSSSEKSK RSVRFCPVNV ILDEDSKQRE
201: SIRHHQSRVM EENRRVIEAA KELIRTYREN KDVEEEDDDD DDDAASCASS DLFELDNLSS IGIERYREEL PVYETTRLTT NRIISR
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
Arabidopsis Description
Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.