Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78464 | Canola | nucleus | 95.68 | 94.8 |
| CDX70442 | Canola | nucleus | 92.28 | 75.89 |
| Bra008918.1-P | Field mustard | nucleus | 71.3 | 67.94 |
| AT5G12050.1 | Thale cress | nucleus | 69.75 | 62.43 |
| Bra023361.1-P | Field mustard | nucleus | 63.27 | 61.19 |
| Bra021523.1-P | Field mustard | nucleus | 33.64 | 31.23 |
| Bra030898.1-P | Field mustard | nucleus | 29.32 | 31.05 |
| Bra037972.1-P | Field mustard | nucleus | 26.85 | 30.42 |
| Bra027381.1-P | Field mustard | nucleus | 33.33 | 29.51 |
| KRH52238 | Soybean | nucleus | 34.57 | 29.09 |
| VIT_04s0008g01700.t01 | Wine grape | nucleus | 37.04 | 28.24 |
| KRH61567 | Soybean | mitochondrion, nucleus | 33.64 | 27.66 |
| KRH05403 | Soybean | nucleus | 34.57 | 26.67 |
| Solyc08g062180.1.1 | Tomato | nucleus | 31.48 | 26.36 |
| KRH15613 | Soybean | nucleus | 32.41 | 25.93 |
| PGSC0003DMT400055964 | Potato | nucleus | 28.7 | 24.03 |
Protein Annotations
Description
AT5G12050 (E=2e-054) | unknown protein
Coordinates
chrA03:+:2176921..2177895
Molecular Weight (calculated)
36580.1 Da
IEP (calculated)
8.979
GRAVY (calculated)
-0.905
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRSKPQSRN PSFSSTLLDE IYNSIDPKTK KTQPFVGSVK KQSISVTRSV PDRKLHQDRF FGSVSSSSDS NSSIFSSSDT ELSHGTKKIT SSRPLCFGPS
101: KTKQSKTEDK ALFHQNRATR VFHDCDYASG NQKKLKTPSS PGVRIVNFIN ALFSKQSTAV NSYPRKTSYE DSAFSRKRTE YYYPSTACSS ASSFSRSCLN
201: KRSEKSSGRT KPSVRFSPVN VIVEEEDYLS SGYVRKSVKK NVEDGGRRSV EEIAREFLRD YHKNHENSLV KNNNDLEDYE DEDDDVGSDS SSDLFELDLV
301: GTRHHNLYED ELPVYETTFA GLIL
101: KTKQSKTEDK ALFHQNRATR VFHDCDYASG NQKKLKTPSS PGVRIVNFIN ALFSKQSTAV NSYPRKTSYE DSAFSRKRTE YYYPSTACSS ASSFSRSCLN
201: KRSEKSSGRT KPSVRFSPVN VIVEEEDYLS SGYVRKSVKK NVEDGGRRSV EEIAREFLRD YHKNHENSLV KNNNDLEDYE DEDDDVGSDS SSDLFELDLV
301: GTRHHNLYED ELPVYETTFA GLIL
001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
Arabidopsis Description
Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.