Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0002g01520.t01 | Wine grape | nucleus | 39.06 | 55.52 |
| KRH52238 | Soybean | nucleus | 42.82 | 47.27 |
| KRH61567 | Soybean | mitochondrion, nucleus | 41.18 | 44.42 |
| Solyc08g062180.1.1 | Tomato | nucleus | 39.53 | 43.41 |
| CDX91176 | Canola | nucleus, plastid | 9.18 | 41.05 |
| PGSC0003DMT400055964 | Potato | nucleus | 36.71 | 40.31 |
| KRH15613 | Soybean | nucleus | 36.47 | 38.27 |
| KRH05403 | Soybean | nucleus | 37.65 | 38.1 |
| CDX91175 | Canola | plastid | 13.41 | 37.25 |
| CDX69710 | Canola | nucleus | 29.65 | 37.17 |
| Bra006139.1-P | Field mustard | nucleus | 28.24 | 37.04 |
| CDX78464 | Canola | nucleus | 28.47 | 37.0 |
| Bra008918.1-P | Field mustard | nucleus | 29.18 | 36.47 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 27.76 | 35.22 |
| Bra023361.1-P | Field mustard | nucleus | 26.35 | 33.43 |
| AT5G12050.1 | Thale cress | nucleus | 28.24 | 33.15 |
| CDX85703 | Canola | plastid | 19.76 | 31.94 |
| CDX70442 | Canola | nucleus | 28.24 | 30.46 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 15.53 | 15.21 |
Protein Annotations
| ArrayExpress:VIT_04s0008g01700 | EMBL:FN595231 | EnsemblPlants:VIT_04s0008g01700.t01 | EnsemblPlantsGene:VIT_04s0008g01700 | EntrezGene:100255952 | PANTHER:PTHR33541 |
| PANTHER:PTHR33541:SF2 | ProteinID:CCB46601 | ProteinID:CCB46601.1 | RefSeq:XP_010648376.1 | SEG:seg | UniParc:UPI00015C8D75 |
| UniProt:F6H3R8 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:1328323..1329682
Molecular Weight (calculated)
48552.2 Da
IEP (calculated)
8.617
GRAVY (calculated)
-1.036
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKWEKSLRE DKSSHERKNP SFSSSLLDEI YRSITDGDED HKELHFYRET MAKKHSLRGS RGVGEEEMAR VRGAGVTDKW MEKKGSEKVV SRHQRRSLPE
101: IDKKWQYYQD PLFFSSSSSS SDSSYGGFSS SETESMKSFF APPPRPRPIR TSRLERSEQA LSYGQSEFHM FDDYRHHSAI TREPSKSEEE IIKSKSRALK
201: MYGNLKKVKQ PISPGGRLAT FLNSLFTAGN TKKSTKTTSS AGGCEDWSSE RKLNSQPSTC SSASSFARSC LNKNSPSVKE KSRNDAKRTV RFFPVSIIVD
301: EDCRPCGRKC VYGEEGSTQM SASRKITKRN EEDLKFQDQT RRVEAAAREL HRNFHQKKND NIFNKFHVNY DEEDEDDDAA SCSSSDLFEL DHLALIGNDR
401: YQEELPVYET THIDTNRAIA NGLLV
101: IDKKWQYYQD PLFFSSSSSS SDSSYGGFSS SETESMKSFF APPPRPRPIR TSRLERSEQA LSYGQSEFHM FDDYRHHSAI TREPSKSEEE IIKSKSRALK
201: MYGNLKKVKQ PISPGGRLAT FLNSLFTAGN TKKSTKTTSS AGGCEDWSSE RKLNSQPSTC SSASSFARSC LNKNSPSVKE KSRNDAKRTV RFFPVSIIVD
301: EDCRPCGRKC VYGEEGSTQM SASRKITKRN EEDLKFQDQT RRVEAAAREL HRNFHQKKND NIFNKFHVNY DEEDEDDDAA SCSSSDLFEL DHLALIGNDR
401: YQEELPVYET THIDTNRAIA NGLLV
001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL
Arabidopsis Description
Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.