CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008918.1-P	Field mustard	nucleus	91.15	90.88
CDX97165	Canola	cytosol, nucleus, peroxisome	82.3	83.28
CDX78464	Canola	nucleus	67.55	70.03
AT5G12050.1	Thale cress	nucleus	66.37	62.15
CDX70442	Canola	nucleus	65.49	56.35
CDX91176	Canola	nucleus, plastid	15.34	54.74
CDX91175	Canola	plastid	23.89	52.94
CDX85703	Canola	plastid	38.64	49.81
CDY02474	Canola	nucleus	8.85	42.25
CDY10614	Canola	nucleus	30.09	33.66
CDY24062	Canola	nucleus	31.86	32.93
CDY33081	Canola	nucleus	30.97	32.92
CDY39086	Canola	nucleus	32.74	31.53
CDY33260	Canola	nucleus	32.45	31.25
CDY55213	Canola	nucleus	27.73	30.92
CDX97534	Canola	nucleus	29.5	30.86
KRH52238	Soybean	nucleus	34.51	30.39
KRH61567	Soybean	mitochondrion, nucleus	34.51	29.7
VIT_04s0008g01700.t01	Wine grape	nucleus	37.17	29.65
Solyc08g062180.1.1	Tomato	nucleus	31.27	27.39
KRH15613	Soybean	nucleus	31.86	26.67
PGSC0003DMT400055964	Potato	nucleus	30.38	26.61
KRH05403	Soybean	nucleus	32.74	26.43

Protein Annotations

EnsemblPlants:CDX69710	EnsemblPlantsGene:GSBRNA2T00135740001	PANTHER:PTHR33541	PANTHER:PTHR33541:SF2	ProteinID:CDX69710	ProteinID:CDX69710.1
SEG:seg	UniParc:UPI0004EDDC94	MapMan:35.1	:	:	:

Description

BnaA10g20590D

Coordinates

chrLK031790:-:1480008..1481138

Molecular Weight (calculated)

38590.1 Da

IEP (calculated)

8.981

GRAVY (calculated)

-1.003

Length

339 amino acids

Sequence
(BLAST)

001: MHRSRNPSFS STLLDEIYNS IDHKTHKTQS FTGFVNTTNN KQSISVTRPV PDRKIHKDRF FSSVSSSSDS NSSFFSSSDT EPSHPKKKSS SRPLCFGPSK
101: PRKTEDKTLF HQNRAFRVSD DYDYEKSEHT RTRRSSSNQK KPKTPASPGV RIVNFINSLF TNNNSSKGHP KKMSCDDSAF VSKPTDYYYP SASTTCSSAS
201: SFSRTCLNRS SEKSSDRVKR SVRFSPVNVI VPESRSYVEE EDYLSNNGYV RKSVKKNVED RGRRSVEEIA REFLRDYHKK HDNGLVKINA FEDYEDDDDD
301: VASDSSSDLF ELDLVGTHHH NLYGDELPVY ETTFAGLIL

Best Arabidopsis Sequence Match ( AT5G12050.1 )
(BLAST)

001: MHKSKRNPSF SSTLLDEIYN SIDPKTQKTQ PYVGSVNTTT KKQSIVTRSV PDRKIHRDRF FGSVSSSSDS NSSIFSSSDT ELTHGKKTTS SRPLCFGPSK
101: TKPRKTEDKT LFHQNRATRV YDDYDYASDV PKFNRHDENW ENTRNRRSVK SSGNQKKPKT PASPGGRIVN FLNSLFSNNS KQSNAVKSYP RKTSYDDSAY
201: VRKTSNDYHS STTTCSSASS FSRSCMNKGY EKSSGRIKRS VRFSPVNVIV PESFTSKEED YFSNGNARKS VKKNVEDGGR RSVEEIAREF LRDYHKNHEN
301: SLVKTNGFED YEDDDEDDDD DDVASDSSSD LFELDLVGNH HHHNVYGDEL PVYETTFAGL IL

Arabidopsis Description

Protein BIG GRAIN 1-like D [Source:UniProtKB/Swiss-Prot;Acc:Q9LYH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.