Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42800.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10614 | Canola | nucleus | 94.37 | 22.11 |
| CDY33081 | Canola | nucleus | 85.92 | 19.12 |
| CDX91175 | Canola | plastid | 40.85 | 18.95 |
| CDY24062 | Canola | nucleus | 83.1 | 17.99 |
| CDX97534 | Canola | nucleus | 77.46 | 16.98 |
| CDY39086 | Canola | nucleus | 76.06 | 15.34 |
| CDY33260 | Canola | nucleus | 74.65 | 15.06 |
| CDY55213 | Canola | nucleus | 53.52 | 12.5 |
| CDX85703 | Canola | plastid | 40.85 | 11.03 |
| CDX97165 | Canola | cytosol, nucleus, peroxisome | 43.66 | 9.25 |
| CDX78464 | Canola | nucleus | 40.85 | 8.87 |
| CDX69710 | Canola | nucleus | 42.25 | 8.85 |
| CDX70442 | Canola | nucleus | 42.25 | 7.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.13 | 5.32 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 19.72 | 4.84 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 18.31 | 4.56 |
| AT3G42800.1 | Thale cress | nucleus | 19.72 | 4.11 |
| GSMUA_Achr10P... | Banana | nucleus | 16.9 | 3.97 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 15.49 | 3.65 |
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 15.49 | 3.56 |
| KRH19263 | Soybean | nucleus | 18.31 | 3.35 |
| KRH02643 | Soybean | nucleus | 18.31 | 3.19 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 15.49 | 2.53 |
| CDX91176 | Canola | nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY02474 | EnsemblPlantsGene:GSBRNA2T00114109001 | ncoils:Coil | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF5 | ProteinID:CDY02474 |
| ProteinID:CDY02474.1 | SEG:seg | UniParc:UPI0004EE3B1E | MapMan:35.2 | : | : |
Description
BnaA08g00810D
Coordinates
chrLK031935:-:311331..311658
Molecular Weight (calculated)
8239.5 Da
IEP (calculated)
4.365
GRAVY (calculated)
-0.789
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MEENRRVIEA AKELIRTYQK NKDVDDDDGG SCASSDLFEL DHLSVIGIDS YREELPVYET TRFNTNRIIS R
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
Arabidopsis Description
Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.