Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42800.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT3G42800.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 73.79 | 75.75 |
| KRH19263 | Soybean | nucleus | 39.16 | 31.19 |
| GSMUA_Achr3P07880_001 | Banana | nucleus | 29.13 | 31.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.16 | 30.85 |
| KRH02643 | Soybean | nucleus | 40.45 | 30.64 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 42.72 | 30.41 |
| AT3G42800.1 | Thale cress | nucleus | 33.33 | 30.21 |
| GSMUA_Achr9P16030_001 | Banana | nucleus | 27.18 | 29.47 |
| GSMUA_Achr10P... | Banana | nucleus | 22.98 | 23.51 |
| Solyc08g062180.1.1 | Tomato | nucleus | 20.06 | 16.02 |
| CDY02474 | Canola | nucleus | 3.56 | 15.49 |
| Solyc03g121970.1.1 | Tomato | nucleus | 20.39 | 15.44 |
Protein Annotations
| EnsemblPlants:Solyc07g041290.1.1 | EnsemblPlantsGene:Solyc07g041290.1 | PANTHER:PTHR33541 | PANTHER:PTHR33541:SF7 | SEG:seg | UniParc:UPI000276B9FA |
| UniProt:K4CE02 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:52199553..52200482
Molecular Weight (calculated)
35047.9 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.895
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSWEKPIIR VQQRRKTPSF SSSLLESIYH SIDESKEEEE KHQQVPNRKS NNKEEEIVSL RRAILIEKWM ESYKYSQSSG HFSSDSSSSA ESSMFSSSET
101: ESRSINTLPK TTTQVRRPDR VVTFSTETKT PKCEGGGRFM RTKSRALKMV KQPISPGGKI ANFLNSIFNS KNIKKNHQED WSSVRKSRSV NDSTTMTTSS
201: CLNKTPSSTS ISNKSKRSVR FCPVTVIVDE DSQPCGHKSI YRNEEPKHQY RGFYQDEDED DGRSCASSDL FELENISMIG HVHANRDGLP VYGTTSFKMN
301: QAIARGLLI
101: ESRSINTLPK TTTQVRRPDR VVTFSTETKT PKCEGGGRFM RTKSRALKMV KQPISPGGKI ANFLNSIFNS KNIKKNHQED WSSVRKSRSV NDSTTMTTSS
201: CLNKTPSSTS ISNKSKRSVR FCPVTVIVDE DSQPCGHKSI YRNEEPKHQY RGFYQDEDED DGRSCASSDL FELENISMIG HVHANRDGLP VYGTTSFKMN
301: QAIARGLLI
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
Arabidopsis Description
Protein BIG GRAIN 1-like A [Source:UniProtKB/Swiss-Prot;Acc:Q9LVK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.