Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P16030_001 | Banana | nucleus | 50.87 | 51.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.53 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 33.22 | 31.79 |
| PGSC0003DMT400050356 | Potato | mitochondrion, nucleus | 31.14 | 29.9 |
| Solyc07g041290.1.1 | Tomato | mitochondrion, nucleus | 31.14 | 29.13 |
| AT3G42800.1 | Thale cress | nucleus | 31.14 | 26.39 |
| KRH19263 | Soybean | nucleus | 32.18 | 23.97 |
| VIT_11s0016g01450.t01 | Wine grape | nucleus, plastid | 33.91 | 22.58 |
| KRH02643 | Soybean | nucleus | 31.49 | 22.3 |
| CDY02474 | Canola | nucleus | 4.84 | 19.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P07880_001 | EnsemblPlants:GSMUA_Achr3T07880_001 | EnsemblPlantsGene:GSMUA_Achr3G07880_001 | PANTHER:PTHR33541 | SEG:seg | UniParc:UPI000295BA62 |
| UniProt:M0SCQ5 | MapMan:35.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G07880_001]
Coordinates
chr3:-:5465208..5466317
Molecular Weight (calculated)
31178.3 Da
IEP (calculated)
8.821
GRAVY (calculated)
-0.802
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MERWERAPNR RSRSKNPSFS SSLLDAIYRS IDEEHSDNNG HLRAPDRSSN HKKREGQPMP APCIDRCHCR SRTISSTGFS SSSDAESIRS DCIPRPHHPT
101: PEKKTKKAKC GSIRSGLRGL RKSRTPDAAS MAAPSPASPG ARLASFLNAL FASAGSPKKP KTPTLAAPAM ADRRRASGAE AGKRSVRFYP VSVIVDEDSR
201: PCGHKRLQDD AEGEAAPVAA RVEELLRAAG ADAEAEEEGE DGGSESSSDL FELENLTVVM RGGGYRDELP VYGTTDVSTN RAISQGLIH
101: PEKKTKKAKC GSIRSGLRGL RKSRTPDAAS MAAPSPASPG ARLASFLNAL FASAGSPKKP KTPTLAAPAM ADRRRASGAE AGKRSVRFYP VSVIVDEDSR
201: PCGHKRLQDD AEGEAAPVAA RVEELLRAAG ADAEAEEEGE DGGSESSSDL FELENLTVVM RGGGYRDELP VYGTTDVSTN RAISQGLIH
001: MDPWDTYNIP LDHQHRLRNR RDHRHPSFSS TLLDQIYRSI DDSSTNSSSM RKTKHQNRED TRVSANRRDD FNRSKNLKTI EPVFFKHSSS SSSDSSGFSS
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
101: SESDYFYRRS KSSPAISHPK PIRTTVERFE RSPQNHRPNS SNKQEHGSFL KTKSKALKIY SDLKKVKQPI SPGGRLATFL NSIFTGAGNT KKLNKINTTV
201: TSTTAAAAAA SSTTTCSSAS SFSRSCLSKT PSSSEKSKRS VRFCPVNVIF DEDSSKYNNK NNKVYGNNER EYESIRHTLE NRVMEENRRV IEAAKELLRS
301: YQKKNKEVIE VSVEDDEEDD DDDALSCTSS DLFELDNLSA IGIDRYREEL PVYETTRLNT NRIISR
Arabidopsis Description
Protein BIG GRAIN 1-like B [Source:UniProtKB/Swiss-Prot;Acc:Q9SLL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.